Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99815 * 2 1 4 4 H 1.09006 * 110.34429 * 332.12512 * 3 2 1 5 5 C 1.51364 * 110.30854 * 94.25108 * 3 2 1 6 6 C 1.38497 * 130.39070 * 281.74227 * 5 3 2 7 7 C 1.38108 * 120.21236 * 179.97438 * 6 5 3 8 8 C 1.38248 * 119.93659 * 359.97438 * 7 6 5 9 9 C 1.38106 * 119.93455 * 0.02562 * 8 7 6 10 10 C 1.38212 * 109.75887 * 101.73047 * 5 3 2 11 11 C 1.51371 * 109.75916 * 0.02562 * 10 5 3 12 12 C 1.54344 * 105.17002 * 17.18415 * 11 10 5 13 13 H 1.09002 * 110.82327 * 91.87895 * 12 11 10 14 14 N 1.46498 * 110.99015 * 215.35342 * 12 11 10 15 15 C 1.36938 * 119.99941 * 270.77039 * 14 12 11 16 16 H 1.07999 * 120.00071 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00020 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00383 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47353 * 120.00258 * 19 17 15 22 22 H 1.48506 * 109.47122 * 240.00280 * 19 17 15 23 23 H 1.08993 * 109.47369 * 300.00030 * 1 2 3 24 24 H 1.09000 * 109.47011 * 60.00838 * 1 2 3 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.89865 * 0.02562 * 6 5 3 27 27 H 1.08004 * 120.02690 * 180.02562 * 7 6 5 28 28 H 1.08003 * 120.03438 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.89113 * 179.97438 * 9 8 7 30 30 H 1.09002 * 110.30129 * 258.25994 * 11 10 5 31 31 H 1.09002 * 110.30208 * 136.10916 * 11 10 5 32 32 H 0.97003 * 120.00543 * 90.77252 * 14 12 11 33 33 H 0.96991 * 120.00795 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0191 -0.4779 5 6 2.3200 1.7426 1.4156 6 6 1.4859 2.2345 2.4059 7 6 1.9995 2.5727 3.6425 8 6 3.3503 2.4197 3.8938 9 6 4.1836 1.9293 2.9077 10 6 3.6706 1.5903 1.6667 11 6 4.3610 1.0410 0.4367 12 6 3.3734 1.2856 -0.7239 13 1 3.5708 2.2434 -1.2054 14 7 3.4290 0.1938 -1.6992 15 6 4.3119 0.2535 -2.7442 16 1 4.9675 1.1053 -2.8492 17 6 4.3649 -0.7813 -3.6680 18 7 3.5663 -1.8196 -3.5398 19 14 5.5698 -0.7002 -5.0932 20 1 6.3491 0.5613 -5.0113 21 1 6.4960 -1.8589 -5.0250 22 1 4.8225 -0.7386 -6.3759 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.4304 2.3532 2.2107 27 1 1.3463 2.9557 4.4126 28 1 3.7536 2.6833 4.8604 29 1 5.2389 1.8104 3.1047 30 1 4.5501 -0.0261 0.5539 31 1 5.2948 1.5739 0.2574 32 1 2.8404 -0.5715 -1.6047 33 1 3.6031 -2.5424 -4.1854 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334739901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = -21.263995 kcal Electronic energy + Delta-G solvation = -16213.579464 eV Core-core repulsion = 13624.796476 eV Total energy + Delta-G solvation = -2588.782988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26249 -38.51618 -36.75747 -34.81456 -32.28991 -32.04921 -28.88676 -28.20446 -26.72892 -25.56786 -22.93787 -21.77696 -21.43198 -19.35616 -17.80457 -17.40560 -16.76403 -16.34817 -16.08934 -15.53562 -15.38691 -15.18291 -14.67596 -14.09541 -14.06712 -13.64387 -13.41447 -12.96390 -12.82253 -12.69142 -12.29435 -12.20128 -12.08561 -11.83135 -11.72168 -11.66878 -10.96246 -10.51499 -9.73439 -9.47225 -9.00704 -7.91690 -5.21369 0.42236 0.51290 1.47985 1.49295 1.59390 2.55904 2.72933 3.10019 3.38112 3.58534 3.67693 4.01585 4.02383 4.20809 4.25836 4.40947 4.48058 4.55444 4.59615 4.66253 4.71468 4.80322 4.91133 4.99636 5.10607 5.22879 5.36029 5.50434 5.57340 5.61775 5.82041 6.14392 6.25523 6.36709 7.36765 8.13227 8.40373 9.32087 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.006891 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.531337 B = 4062.071873 C = 4634.714051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.390 6.390 3 C 0.125 3.875 4 H 0.074 0.926 5 C -0.138 4.138 6 C -0.102 4.102 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.090 4.090 11 C -0.098 4.098 12 C 0.172 3.828 13 H 0.070 0.930 14 N -0.723 5.723 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.293 1.293 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.131 0.869 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.383 0.617 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 10.028 14.345 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.309 6.309 3 C 0.066 3.934 4 H 0.092 0.908 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.145 4.145 8 C -0.129 4.129 9 C -0.143 4.143 10 C -0.091 4.091 11 C -0.138 4.138 12 C 0.062 3.938 13 H 0.088 0.912 14 N -0.363 5.363 15 C -0.375 4.375 16 H 0.096 0.904 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.220 1.220 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.152 0.848 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.217 0.783 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.263 9.924 14.199 17.840 hybrid contribution 0.261 -0.533 -1.032 1.190 sum -4.002 9.391 13.167 16.661 Atomic orbital electron populations 1.22939 0.80037 1.03405 1.00450 1.87955 1.21095 1.27204 1.94597 1.21749 0.95525 0.84758 0.91374 0.90849 1.21032 0.95105 1.01021 0.96686 1.20905 0.99765 0.98477 0.92841 1.21394 0.96027 1.00435 0.96646 1.21427 0.93734 0.98262 0.99484 1.20934 1.01022 1.00389 0.91994 1.20752 0.95245 0.97798 0.95315 1.21755 0.99495 0.99800 0.92772 1.21170 0.91811 0.92191 0.88671 0.91179 1.42417 1.44792 1.21823 1.27276 1.19741 1.12616 1.03244 1.01889 0.90382 1.25598 1.01996 0.96847 1.02366 1.69869 1.42863 1.10412 1.38813 0.85051 0.78168 0.77497 0.78892 1.18843 1.22182 1.21995 0.92364 0.93926 0.89220 0.84816 0.82713 0.82806 0.85071 0.92559 0.91091 0.78303 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.85 113.37 1.23 2.06 16 2 O -0.39 -15.70 8.85 -148.98 -1.32 -17.02 16 3 C 0.12 4.63 3.26 30.52 0.10 4.73 16 4 H 0.07 2.49 7.82 -2.38 -0.02 2.47 16 5 C -0.14 -4.46 5.81 -19.60 -0.11 -4.57 16 6 C -0.10 -2.57 10.04 22.30 0.22 -2.35 16 7 C -0.13 -2.63 10.05 22.24 0.22 -2.40 16 8 C -0.11 -2.36 10.05 22.24 0.22 -2.13 16 9 C -0.13 -3.36 10.04 22.30 0.22 -3.14 16 10 C -0.09 -3.03 6.14 -19.60 -0.12 -3.15 16 11 C -0.10 -3.88 6.50 30.52 0.20 -3.68 16 12 C 0.17 7.40 3.65 45.91 0.17 7.56 16 13 H 0.07 2.93 8.11 -2.39 -0.02 2.91 16 14 N -0.72 -38.79 5.16 -318.60 -1.64 -40.44 16 15 C -0.24 -13.92 9.97 84.03 0.84 -13.08 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 18 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 19 Si 0.97 47.00 29.55 68.60 2.03 49.02 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.04 1.23 8.11 -2.39 -0.02 1.21 16 25 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.38 22.44 6.47 -92.71 -0.60 21.84 16 33 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -69.06 281.17 3.51 -65.55 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.50 Total: 28.06 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.66 Total: -24.15 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -1.36 Total: -101.47 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.32 Total: -17.02 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -69.06 3.51 -65.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334739901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.288 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds