Wall clock time and date at job start Sun Mar 29 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38208 * 119.94684 * 2 1 4 4 N 1.32245 * 120.19221 * 180.28250 * 3 2 1 5 5 C 1.31949 * 120.08248 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.04840 * 180.02562 * 5 4 3 7 7 C 1.39298 * 119.89807 * 0.02562 * 5 4 3 8 8 N 1.39002 * 120.09257 * 179.97438 * 7 5 4 9 9 C 1.47477 * 110.99770 * 275.98858 * 8 7 5 10 10 C 1.53514 * 87.93229 * 221.29815 * 9 8 7 11 11 C 1.50700 * 114.16910 * 139.67058 * 10 9 8 12 12 H 1.08007 * 119.99941 * 266.15543 * 11 10 9 13 13 C 1.37873 * 120.00398 * 86.16151 * 11 10 9 14 14 N 1.31516 * 119.99434 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00447 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46933 * 60.00121 * 15 13 11 17 17 H 1.48498 * 109.47231 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47023 * 299.99988 * 15 13 11 19 19 C 1.47474 * 110.99718 * 180.02562 * 8 7 5 20 20 N 1.32224 * 119.95216 * 180.27703 * 2 1 3 21 21 H 1.09001 * 109.47117 * 269.72407 * 1 2 3 22 22 H 1.09002 * 109.47305 * 29.72530 * 1 2 3 23 23 H 1.09005 * 109.46925 * 149.72869 * 1 2 3 24 24 H 1.07997 * 119.90439 * 0.25312 * 3 2 1 25 25 H 1.09002 * 109.47149 * 269.97753 * 6 5 4 26 26 H 1.08993 * 109.47313 * 29.98256 * 6 5 4 27 27 H 1.09005 * 109.46551 * 149.98544 * 6 5 4 28 28 H 1.09003 * 113.47521 * 336.06257 * 9 8 7 29 29 H 1.09000 * 113.47630 * 106.53084 * 9 8 7 30 30 H 1.08998 * 114.34357 * 272.36272 * 10 9 8 31 31 H 0.97002 * 119.99752 * 180.02562 * 14 13 11 32 32 H 1.09007 * 113.47831 * 253.46785 * 19 8 7 33 33 H 1.09003 * 113.47872 * 23.87118 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1976 0.0000 4 7 3.5193 1.2032 -0.0056 5 6 4.1856 0.0643 -0.0108 6 6 5.6926 0.0717 -0.0166 7 6 3.4938 -1.1448 -0.0108 8 7 4.1916 -2.3469 -0.0167 9 6 4.5753 -2.7285 -1.3887 10 6 4.1942 -4.1727 -1.0340 11 6 3.4721 -4.9080 -2.1335 12 1 2.3923 -4.9239 -2.1539 13 6 4.1897 -5.5605 -3.1134 14 7 5.5045 -5.5416 -3.0883 15 14 3.2946 -6.4725 -4.4759 16 1 2.4405 -5.5206 -5.2306 17 1 4.2862 -7.0841 -5.3967 18 1 2.4455 -7.5374 -3.8839 19 6 3.2662 -3.4951 -0.0162 20 7 2.1671 -1.1456 -0.0055 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5181 24 1 1.6545 2.1314 0.0041 25 1 6.0519 0.0753 -1.0457 26 1 6.0536 0.9624 0.4975 27 1 6.0622 -0.8176 0.4941 28 1 3.9390 -2.2875 -2.1560 29 1 5.6377 -2.5978 -1.5947 30 1 5.0007 -4.7530 -0.5857 31 1 6.0094 -6.0004 -3.7779 32 1 3.2189 -4.0144 0.9411 33 1 2.2803 -3.2584 -0.4164 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882601606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:50 Heat of formation + Delta-G solvation = 65.135208 kcal Electronic energy + Delta-G solvation = -16192.103443 eV Core-core repulsion = 13639.359758 eV Total energy + Delta-G solvation = -2552.743686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62685 -40.38727 -35.89142 -35.10860 -33.75388 -31.17453 -30.06045 -27.00800 -26.81558 -26.33821 -24.00398 -22.71018 -20.68905 -18.99469 -18.86244 -17.40910 -16.89142 -16.61634 -16.32465 -15.93485 -14.74016 -14.66229 -14.36079 -14.07421 -13.79340 -13.47237 -13.43413 -13.16171 -13.05722 -13.02603 -12.82983 -12.51119 -12.37790 -12.06294 -11.77093 -11.40816 -10.99743 -10.59506 -10.56359 -10.04884 -9.39311 -8.18900 -6.30246 -0.23841 0.10553 1.42322 1.43170 1.51382 2.39553 2.51577 2.81111 3.08238 3.21489 3.25941 3.56917 3.92537 4.06513 4.24423 4.31740 4.34887 4.50062 4.68336 4.71274 4.75714 4.78664 4.85078 4.88785 4.96805 5.05254 5.13911 5.20651 5.46378 5.57735 5.79112 6.15986 6.24611 6.37391 6.77335 6.82759 7.38267 8.90582 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.007137 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.476921 B = 3922.117916 C = 4438.370003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.081 3.919 3 C 0.029 3.971 4 N -0.440 5.440 5 C 0.060 3.940 6 C -0.087 4.087 7 C 0.218 3.782 8 N -0.430 5.430 9 C 0.040 3.960 10 C 0.030 3.970 11 C -0.533 4.533 12 H 0.056 0.944 13 C 0.020 3.980 14 N -0.917 5.917 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.020 3.980 20 N -0.493 5.493 21 H 0.097 0.903 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.209 0.791 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.265 0.735 32 H 0.072 0.928 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 12.157 4.808 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.061 4.061 3 C -0.131 4.131 4 N -0.155 5.155 5 C -0.082 4.082 6 C -0.145 4.145 7 C -0.015 4.015 8 N -0.149 5.149 9 C -0.087 4.087 10 C 0.011 3.989 11 C -0.571 4.571 12 H 0.074 0.926 13 C -0.180 4.180 14 N -0.555 5.555 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.108 4.108 20 N -0.213 5.213 21 H 0.115 0.885 22 H 0.130 0.870 23 H 0.086 0.914 24 H 0.225 0.775 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.020 12.172 5.242 14.556 hybrid contribution -0.696 -0.697 -1.195 1.549 sum -6.716 11.475 4.047 13.898 Atomic orbital electron populations 1.20800 0.84945 1.04865 1.04562 1.22931 1.00158 0.88597 0.94450 1.24082 0.90087 1.00315 0.98650 1.68253 1.09758 1.28364 1.09112 1.22106 0.99367 0.87443 0.99315 1.20585 0.86327 1.04201 1.03406 1.21609 0.89285 0.94607 0.95981 1.66439 1.25924 0.98864 1.23707 1.23805 0.99945 0.98982 0.85949 1.20067 0.94431 0.91055 0.93356 1.21252 0.92937 1.33175 1.09782 0.92566 1.25779 0.95540 0.96491 1.00177 1.70055 1.06531 1.43702 1.35188 0.85637 0.78393 0.78976 0.78853 1.19799 1.20647 1.19268 1.23812 0.96755 0.90042 1.00215 1.68305 1.08237 1.31660 1.13090 0.88502 0.86983 0.91376 0.77470 0.90358 0.89061 0.90120 0.94062 0.90998 0.93780 0.92572 0.90943 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 10.19 71.23 0.73 -1.01 16 2 C 0.08 2.29 6.78 42.49 0.29 2.57 16 3 C 0.03 0.75 10.86 84.62 0.92 1.67 16 4 N -0.44 -13.79 10.41 -182.76 -1.90 -15.69 16 5 C 0.06 2.09 6.80 42.80 0.29 2.38 16 6 C -0.09 -2.60 9.74 71.24 0.69 -1.91 16 7 C 0.22 8.55 5.84 133.02 0.78 9.33 16 8 N -0.43 -18.26 5.44 -731.67 -3.98 -22.24 16 9 C 0.04 1.86 6.99 83.56 0.58 2.45 16 10 C 0.03 1.54 3.77 -11.20 -0.04 1.50 16 11 C -0.53 -29.37 8.82 25.60 0.23 -29.14 16 12 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 13 C 0.02 1.12 5.46 84.65 0.46 1.58 16 14 N -0.92 -52.64 13.26 21.45 0.28 -52.36 16 15 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.02 0.90 6.96 83.56 0.58 1.48 16 20 N -0.49 -18.38 8.31 -180.74 -1.50 -19.88 16 21 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.11 1.28 8.08 -2.39 -0.02 1.26 16 23 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.08 2.51 7.47 -2.38 -0.02 2.49 16 28 H 0.04 2.03 7.85 -2.39 -0.02 2.01 16 29 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.04 2.45 8.11 -2.39 -0.02 2.43 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.07 3.06 8.14 -2.38 -0.02 3.05 16 33 H 0.08 3.66 6.63 -2.39 -0.02 3.64 16 Total: -1.00 -64.14 281.66 1.53 -62.61 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.10 Total: 11.68 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.51 Total: -9.11 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -7.10 Total: -110.17 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.14 1.53 -62.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882601606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.741 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds