Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00377 * 2 1 4 4 C 1.50696 * 109.47293 * 293.95517 * 3 2 1 5 5 H 1.07994 * 120.00141 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99924 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99935 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47104 * 90.00208 * 8 6 4 10 10 H 1.48504 * 109.46931 * 210.00394 * 8 6 4 11 11 H 1.48504 * 109.46939 * 329.99585 * 8 6 4 12 12 C 1.46900 * 111.00087 * 123.96028 * 2 1 3 13 13 C 1.50703 * 109.47173 * 66.04079 * 12 2 1 14 14 C 1.39954 * 126.07153 * 269.98089 * 13 12 2 15 15 C 1.37864 * 107.09949 * 179.76071 * 14 13 12 16 16 C 1.43202 * 126.22357 * 180.27175 * 15 14 13 17 17 N 6.73329 * 66.52716 * 165.32288 * 2 1 3 18 18 N 1.37569 * 107.55371 * 0.41074 * 15 14 13 19 19 C 1.46499 * 125.68198 * 179.83671 * 18 15 14 20 20 C 1.35364 * 126.07135 * 89.99844 * 13 12 2 21 21 H 1.08996 * 109.46703 * 296.04411 * 1 2 3 22 22 H 1.09007 * 109.46970 * 56.04196 * 1 2 3 23 23 H 1.08997 * 109.47287 * 176.04137 * 1 2 3 24 24 H 1.09003 * 109.46661 * 53.96016 * 3 2 1 25 25 H 1.09000 * 109.47150 * 173.95549 * 3 2 1 26 26 H 0.97004 * 119.99728 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46991 * 306.04264 * 12 2 1 28 28 H 1.08997 * 109.47008 * 186.04098 * 12 2 1 29 29 H 1.08001 * 126.45425 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47391 * 269.69756 * 19 18 15 31 31 H 1.09001 * 109.46813 * 149.69812 * 19 18 15 32 32 H 1.09004 * 109.47041 * 29.69940 * 19 18 15 33 33 H 1.08004 * 125.57459 * 359.96234 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0484 6 6 2.0270 3.3495 -1.5284 7 7 2.7122 4.0018 -0.6148 8 14 1.5821 4.1874 -3.1375 9 1 0.2698 4.8676 -2.9951 10 1 2.6242 5.1888 -3.4788 11 1 1.4988 3.1719 -4.2178 12 6 1.9955 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 6 0.4758 -2.8418 1.4468 15 6 0.5453 -4.1678 1.0759 16 6 -0.4351 -5.1753 1.3486 17 7 -1.2130 -5.9746 1.5648 18 7 1.7293 -4.3478 0.3990 19 6 2.2053 -5.6115 -0.1691 20 6 2.3806 -3.1581 0.3401 21 1 -0.3632 0.4512 0.9233 22 1 -0.3633 0.5741 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5612 1.9272 0.8310 25 1 3.0798 1.3443 0.1082 26 1 2.9869 4.9179 -0.7768 27 1 1.5612 -0.3874 2.0627 28 1 3.0797 -0.6613 1.1755 29 1 -0.3259 -2.3703 1.9957 30 1 2.8007 -6.1425 0.5737 31 1 2.8179 -5.4072 -1.0472 32 1 1.3514 -6.2251 -0.4565 33 1 3.3358 -2.9875 -0.1342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207101761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = 86.339268 kcal Electronic energy + Delta-G solvation = -15459.515204 eV Core-core repulsion = 12907.690995 eV Total energy + Delta-G solvation = -2551.824209 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.28340 -36.68760 -36.30983 -33.27353 -32.25407 -29.88952 -27.84822 -26.79749 -25.79488 -23.42536 -22.21378 -20.53996 -19.63995 -17.70172 -16.22893 -15.75984 -15.65040 -14.77248 -14.32959 -14.13947 -13.81063 -13.55579 -13.45864 -13.17734 -12.85053 -12.51738 -12.31882 -12.16387 -11.89396 -11.59683 -11.23172 -10.87902 -10.73361 -10.63084 -10.37155 -9.81270 -9.18190 -8.59425 -8.39477 -8.05908 -7.12939 -5.99126 -3.99802 1.41323 2.20022 2.81010 3.01063 3.34212 3.40392 3.44375 3.46022 3.88364 4.46807 4.54693 4.90733 5.12149 5.16431 5.29794 5.37106 5.40811 5.52817 5.87576 6.06435 6.22286 6.38010 6.38832 6.52116 6.83485 6.87211 7.04664 7.15379 7.35524 7.40918 7.42059 7.85634 8.14871 8.28621 8.62204 9.08501 9.64252 11.11727 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.043459 B = 0.004789 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.128500 B = 5845.190989 C = 5908.640455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.536 5.536 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.121 3.879 13 C -0.145 4.145 14 C -0.100 4.100 15 C 0.030 3.970 16 C 0.290 3.710 17 N -0.428 5.428 18 N -0.430 5.430 19 C 0.070 3.930 20 C 0.050 3.950 21 H 0.008 0.992 22 H 0.070 0.930 23 H 0.049 0.951 24 H -0.009 1.009 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -15.203 2.531 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.261 5.261 3 C 0.066 3.934 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.008 4.008 13 C -0.151 4.151 14 C -0.130 4.130 15 C -0.082 4.082 16 C -0.024 4.024 17 N -0.106 5.106 18 N -0.106 5.106 19 C -0.071 4.071 20 C -0.085 4.085 21 H 0.027 0.973 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.008 0.992 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.266 -16.844 2.310 17.004 hybrid contribution -0.155 1.248 -0.246 1.282 sum -0.421 -15.596 2.064 15.737 Atomic orbital electron populations 1.22219 0.88950 0.99779 1.00119 1.62119 1.07070 1.17286 1.39601 1.19742 0.95367 0.81709 0.96541 1.21181 1.34534 0.96837 1.01773 0.91885 1.24980 0.95380 0.97375 0.96902 1.69957 1.38531 1.11398 1.34083 0.86528 0.77967 0.79231 0.83867 1.20802 1.21324 1.19807 1.20410 0.99859 0.87609 0.92904 1.19478 0.95601 0.95985 1.04065 1.21237 0.99214 0.90121 1.02388 1.15545 0.88899 0.91607 1.12136 1.24428 0.92802 0.92071 0.93117 1.81273 1.10091 1.08702 1.10491 1.43820 1.15138 1.09116 1.42521 1.22107 1.01295 0.83875 0.99851 1.21912 0.99832 0.82857 1.03865 0.97310 0.91166 0.93207 0.99164 0.95209 0.92997 0.95023 0.90704 0.83725 0.90536 0.88898 0.90251 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.10 60.06 0.55 1.28 16 2 N -0.54 -11.19 4.74 -245.83 -1.17 -12.35 16 3 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 4 C -0.50 -13.98 8.46 -34.44 -0.29 -14.27 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.12 2.04 5.45 -4.97 -0.03 2.01 16 13 C -0.15 -2.06 4.95 -105.00 -0.52 -2.58 16 14 C -0.10 -1.32 9.46 -39.08 -0.37 -1.69 16 15 C 0.03 0.37 6.75 -83.50 -0.56 -0.20 16 16 C 0.29 3.75 15.20 -22.47 -0.34 3.41 16 17 N -0.43 -6.15 18.54 41.84 0.78 -5.37 16 18 N -0.43 -4.65 3.17 -121.39 -0.38 -5.04 16 19 C 0.07 0.49 10.92 59.85 0.65 1.14 16 20 C 0.05 0.60 11.30 -16.84 -0.19 0.41 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.07 1.47 6.76 -51.93 -0.35 1.12 16 23 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 24 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 25 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 29 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 33 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -31.20 291.31 -6.27 -37.47 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -4.37 Total: -5.60 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.22 Total: -4.20 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.04 Total: -48.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.20 -6.27 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207101761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.804 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds