Wall clock time and date at job start Sun Mar 29 2020 22:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00377 * 2 1 4 4 C 1.50696 * 109.47293 * 293.95517 * 3 2 1 5 5 H 1.07994 * 120.00141 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99924 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99935 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47104 * 90.00208 * 8 6 4 10 10 H 1.48504 * 109.46931 * 210.00394 * 8 6 4 11 11 H 1.48504 * 109.46939 * 329.99585 * 8 6 4 12 12 C 1.46900 * 111.00087 * 123.96028 * 2 1 3 13 13 C 1.50703 * 109.47173 * 66.04079 * 12 2 1 14 14 C 1.39954 * 126.07153 * 269.98089 * 13 12 2 15 15 C 1.37864 * 107.09949 * 179.76071 * 14 13 12 16 16 C 1.43202 * 126.22357 * 180.27175 * 15 14 13 17 17 N 6.73329 * 66.52716 * 165.32288 * 2 1 3 18 18 N 1.37569 * 107.55371 * 0.41074 * 15 14 13 19 19 C 1.46499 * 125.68198 * 179.83671 * 18 15 14 20 20 C 1.35364 * 126.07135 * 89.99844 * 13 12 2 21 21 H 1.08996 * 109.46703 * 296.04411 * 1 2 3 22 22 H 1.09007 * 109.46970 * 56.04196 * 1 2 3 23 23 H 1.08997 * 109.47287 * 176.04137 * 1 2 3 24 24 H 1.09003 * 109.46661 * 53.96016 * 3 2 1 25 25 H 1.09000 * 109.47150 * 173.95549 * 3 2 1 26 26 H 0.97004 * 119.99728 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46991 * 306.04264 * 12 2 1 28 28 H 1.08997 * 109.47008 * 186.04098 * 12 2 1 29 29 H 1.08001 * 126.45425 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47391 * 269.69756 * 19 18 15 31 31 H 1.09001 * 109.46813 * 149.69812 * 19 18 15 32 32 H 1.09004 * 109.47041 * 29.69940 * 19 18 15 33 33 H 1.08004 * 125.57459 * 359.96234 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0484 6 6 2.0270 3.3495 -1.5284 7 7 2.7122 4.0018 -0.6148 8 14 1.5821 4.1874 -3.1375 9 1 0.2698 4.8676 -2.9951 10 1 2.6242 5.1888 -3.4788 11 1 1.4988 3.1719 -4.2178 12 6 1.9955 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 6 0.4758 -2.8418 1.4468 15 6 0.5453 -4.1678 1.0759 16 6 -0.4351 -5.1753 1.3486 17 7 -1.2130 -5.9746 1.5648 18 7 1.7293 -4.3478 0.3990 19 6 2.2053 -5.6115 -0.1691 20 6 2.3806 -3.1581 0.3401 21 1 -0.3632 0.4512 0.9233 22 1 -0.3633 0.5741 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5612 1.9272 0.8310 25 1 3.0798 1.3443 0.1082 26 1 2.9869 4.9179 -0.7768 27 1 1.5612 -0.3874 2.0627 28 1 3.0797 -0.6613 1.1755 29 1 -0.3259 -2.3703 1.9957 30 1 2.8007 -6.1425 0.5737 31 1 2.8179 -5.4072 -1.0472 32 1 1.3514 -6.2251 -0.4565 33 1 3.3358 -2.9875 -0.1342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207101761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:12 Heat of formation + Delta-G solvation = 66.849151 kcal Electronic energy + Delta-G solvation = -15460.360358 eV Core-core repulsion = 12907.690995 eV Total energy + Delta-G solvation = -2552.669364 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24141 -38.17414 -37.49804 -34.83071 -33.74560 -31.01366 -29.34492 -28.30098 -27.03754 -25.09844 -23.19465 -22.23063 -20.70889 -18.79103 -18.24764 -16.77001 -16.71067 -16.43190 -15.75775 -15.56327 -15.20707 -14.90449 -14.47837 -14.25806 -13.88845 -13.70799 -13.59728 -13.42600 -13.12635 -12.94945 -12.82067 -12.66675 -12.48352 -12.21881 -12.12414 -11.68390 -11.20973 -10.55030 -9.56147 -9.09123 -8.82640 -8.13035 -6.22237 0.44244 1.24886 1.45971 1.46575 1.58173 1.75772 2.09375 2.43200 2.47594 2.93435 3.19511 3.70029 3.90152 4.23627 4.38448 4.45079 4.49423 4.68180 4.70036 4.71297 4.88371 4.95941 4.98262 5.20817 5.31114 5.39547 5.44646 5.73206 5.80368 6.05324 6.15577 6.23185 6.42310 6.47822 6.78061 6.95288 7.47286 8.97528 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.043459 B = 0.004789 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.128500 B = 5845.190989 C = 5908.640455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.541 5.541 3 C 0.205 3.795 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.965 3.035 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.125 3.875 13 C -0.172 4.172 14 C -0.106 4.106 15 C 0.025 3.975 16 C 0.308 3.692 17 N -0.455 5.455 18 N -0.422 5.422 19 C 0.062 3.938 20 C 0.067 3.933 21 H 0.007 0.993 22 H 0.050 0.950 23 H 0.075 0.925 24 H -0.039 1.039 25 H 0.010 0.990 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -16.535 1.388 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.265 5.265 3 C 0.079 3.921 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.003 4.003 13 C -0.178 4.178 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.006 4.006 17 N -0.133 5.133 18 N -0.096 5.096 19 C -0.078 4.078 20 C -0.070 4.070 21 H 0.026 0.974 22 H 0.069 0.931 23 H 0.094 0.906 24 H -0.022 1.022 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.078 -18.224 1.169 18.262 hybrid contribution -0.178 1.588 0.151 1.606 sum -0.257 -16.636 1.321 16.690 Atomic orbital electron populations 1.22159 0.88095 1.00976 0.99150 1.62056 1.07877 1.14650 1.41903 1.19410 0.94004 0.83993 0.94700 1.21497 1.34433 0.97391 1.02493 0.92025 1.25856 0.95161 0.98094 1.00442 1.70080 1.39563 1.11818 1.36129 0.85444 0.77801 0.78153 0.79581 1.20146 1.20830 1.18903 1.20353 0.99745 0.88960 0.91239 1.19197 0.97107 0.94740 1.06757 1.21305 0.99169 0.90588 1.02559 1.15456 0.89524 0.91079 1.12635 1.24371 0.92316 0.91547 0.92325 1.81295 1.10872 1.09635 1.11478 1.44067 1.14185 1.10072 1.41324 1.22448 1.01923 0.82224 1.01204 1.22192 1.00012 0.82618 1.02161 0.97408 0.93127 0.90624 1.02174 0.97177 0.92804 0.95403 0.90558 0.83409 0.88669 0.86611 0.90086 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.10 127.69 1.16 2.88 16 2 N -0.54 -22.59 4.74 -931.66 -4.42 -27.01 16 3 C 0.21 10.71 4.72 85.56 0.40 11.11 16 4 C -0.52 -29.10 8.46 25.60 0.22 -28.88 16 5 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 6 C 0.00 0.12 5.46 84.66 0.46 0.59 16 7 N -0.94 -55.73 13.29 21.45 0.28 -55.45 16 8 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.13 4.19 5.45 85.56 0.47 4.65 16 13 C -0.17 -4.61 4.95 -20.11 -0.10 -4.71 16 14 C -0.11 -2.66 9.46 22.60 0.21 -2.45 16 15 C 0.03 0.57 6.75 39.40 0.27 0.84 16 16 C 0.31 7.46 15.20 88.33 1.34 8.81 16 17 N -0.45 -12.50 18.54 19.01 0.35 -12.15 16 18 N -0.42 -7.90 3.17 -537.98 -1.70 -9.60 16 19 C 0.06 0.64 10.92 127.77 1.40 2.04 16 20 C 0.07 1.43 11.30 83.42 0.94 2.37 16 21 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 22 H 0.05 2.12 6.76 -2.38 -0.02 2.11 16 23 H 0.08 2.51 6.32 -2.39 -0.02 2.49 16 24 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 25 H 0.01 0.56 7.93 -2.39 -0.02 0.54 16 26 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 27 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.08 2.48 7.93 -2.39 -0.02 2.47 16 29 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.86 7.78 -2.38 -0.02 0.84 16 33 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -66.92 291.31 4.41 -62.51 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: 1.10 Total: -1.45 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 6.77 Total: -2.75 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -5.49 Total: -104.20 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.92 4.41 -62.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207101761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.357 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds