Wall clock time and date at job start Sun Mar 29 2020 21:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99646 * 2 1 4 4 H 1.09001 * 109.47438 * 245.00457 * 3 2 1 5 5 O 1.42902 * 109.47053 * 5.00159 * 3 2 1 6 6 C 1.52995 * 109.47178 * 124.99883 * 3 2 1 7 7 N 1.46501 * 109.47444 * 180.02562 * 6 3 2 8 8 C 1.39683 * 120.00285 * 179.97438 * 7 6 3 9 9 C 1.39337 * 119.95034 * 359.73405 * 8 7 6 10 10 C 1.38478 * 120.42172 * 179.72058 * 9 8 7 11 11 C 1.37683 * 120.32686 * 0.55005 * 10 9 8 12 12 C 1.40750 * 119.89324 * 359.72309 * 11 10 9 13 13 C 1.41405 * 120.21231 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00531 * 204.44988 * 13 12 11 15 15 C 1.39931 * 119.99781 * 24.44847 * 13 12 11 16 16 N 1.30828 * 119.99896 * 17.90048 * 15 13 12 17 17 Si 1.86798 * 120.00090 * 197.89133 * 15 13 12 18 18 H 1.48501 * 109.46910 * 60.00557 * 17 15 13 19 19 H 1.48505 * 109.47239 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47344 * 300.00318 * 17 15 13 21 21 C 1.38277 * 119.95016 * 180.02562 * 8 7 6 22 22 H 1.07996 * 120.00340 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99594 * 179.97438 * 1 2 3 24 24 H 1.07990 * 120.00684 * 180.02562 * 2 1 3 25 25 H 0.96703 * 114.00028 * 59.99642 * 5 3 2 26 26 H 1.09001 * 109.47404 * 300.00594 * 6 3 2 27 27 H 1.09002 * 109.46801 * 60.00144 * 6 3 2 28 28 H 0.97003 * 119.99616 * 0.02562 * 7 6 3 29 29 H 1.08001 * 119.78903 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.83495 * 180.27503 * 10 9 8 31 31 H 1.07998 * 120.05633 * 179.74665 * 11 10 9 32 32 H 0.97001 * 120.00408 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.16549 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6212 1.4028 -0.9314 5 8 1.1392 2.3887 0.1175 6 6 3.0350 1.3333 1.1816 7 7 3.7670 2.6023 1.1820 8 6 4.7166 2.8605 2.1733 9 6 4.9629 1.9128 3.1645 10 6 5.9062 2.1562 4.1486 11 6 6.6036 3.3433 4.1647 12 6 6.3615 4.3125 3.1733 13 6 7.0743 5.5338 3.1831 14 1 6.6526 6.4090 2.7114 15 6 8.3261 5.6083 3.8040 16 7 8.9945 4.5136 4.0619 17 14 9.0429 7.2707 4.2643 18 1 8.1303 7.9575 5.2134 19 1 10.3692 7.0780 4.9039 20 1 9.1992 8.0982 3.0412 21 6 5.4065 4.0589 2.1730 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 0.6073 2.3663 0.9248 26 1 2.4772 1.2356 2.1130 27 1 3.7400 0.5068 1.0920 28 1 3.5917 3.2635 0.4942 29 1 4.4174 0.9806 3.1630 30 1 6.0927 1.4131 4.9098 31 1 7.3354 3.5302 4.9366 32 1 9.8621 4.5652 4.4926 33 1 5.2134 4.7960 1.4077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253592680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:42 Heat of formation + Delta-G solvation = -14.104986 kcal Electronic energy + Delta-G solvation = -15422.008687 eV Core-core repulsion = 12833.536137 eV Total energy + Delta-G solvation = -2588.472550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.62565 -37.42032 -34.68234 -33.01915 -32.80171 -29.76868 -29.27013 -26.41725 -25.18227 -22.97418 -20.77646 -20.12511 -19.83284 -17.31180 -16.87130 -16.10773 -15.57985 -15.35214 -14.59518 -14.30561 -14.05481 -13.28149 -12.86846 -12.66864 -12.56177 -12.09000 -11.95566 -11.54344 -11.25617 -11.08228 -11.04670 -10.56177 -10.41886 -10.31849 -9.75675 -9.53707 -9.28990 -9.17884 -8.70892 -7.35969 -6.68472 -6.18044 -4.28264 2.02572 2.89662 3.11039 3.14272 3.25628 3.40111 3.98276 4.05568 4.40887 4.74540 4.83393 5.02383 5.06504 5.22701 5.67254 5.84346 5.89591 6.00972 6.32902 6.35910 6.50323 6.56324 7.06982 7.07514 7.14658 7.37335 7.43102 7.51070 7.81549 7.94479 8.17055 8.27659 8.53893 8.68371 8.81817 9.02969 9.15109 10.27693 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.057816 B = 0.004733 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.178093 B = 5914.970273 C = 6263.723992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.188 4.188 3 C 0.121 3.879 4 H 0.111 0.889 5 O -0.555 6.555 6 C 0.113 3.887 7 N -0.758 5.758 8 C 0.224 3.776 9 C -0.304 4.304 10 C -0.075 4.075 11 C -0.200 4.200 12 C 0.142 3.858 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.792 5.792 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.289 4.289 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.117 0.883 25 H 0.376 0.624 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.392 0.608 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.279 0.721 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 -5.839 -4.224 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.206 4.206 3 C 0.062 3.938 4 H 0.129 0.871 5 O -0.361 6.361 6 C -0.013 4.013 7 N -0.393 5.393 8 C 0.126 3.874 9 C -0.327 4.327 10 C -0.094 4.094 11 C -0.220 4.220 12 C 0.139 3.861 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.140 4.140 16 N -0.418 5.418 17 Si 0.731 3.269 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.313 4.313 22 H 0.123 0.877 23 H 0.117 0.883 24 H 0.135 0.865 25 H 0.224 0.776 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.673 -5.942 -4.642 12.265 hybrid contribution 0.178 0.545 0.477 0.746 sum -9.495 -5.398 -4.164 11.689 Atomic orbital electron populations 1.23836 0.96040 1.02338 0.99885 1.23590 0.96835 0.99089 1.01124 1.21170 0.88963 0.84268 0.99381 0.87127 1.86578 1.54702 1.48324 1.46498 1.21619 0.94023 0.88737 0.96967 1.44306 1.44179 1.18346 1.32437 1.17478 0.88278 0.93880 0.87807 1.19847 1.09889 1.00297 1.02683 1.20430 0.95742 0.96583 0.96669 1.21172 1.04018 0.95142 1.01664 1.17333 0.88507 0.92112 0.88169 1.19527 1.01427 0.96776 1.31797 0.90654 1.25889 0.96793 0.97973 0.93308 1.69855 1.11654 1.29311 1.30944 0.86409 0.78177 0.82604 0.79718 1.18868 1.20421 1.19094 1.20405 1.09117 0.97439 1.04351 0.87674 0.88315 0.86483 0.77615 0.92996 0.92332 0.77412 0.89846 0.89697 0.86776 0.90997 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 13.91 29.01 0.40 -1.22 16 2 C -0.19 -1.84 9.51 -36.02 -0.34 -2.18 16 3 C 0.12 1.42 3.60 -27.88 -0.10 1.32 16 4 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 5 O -0.56 -6.77 11.93 -35.23 -0.42 -7.19 16 6 C 0.11 1.64 4.55 -4.04 -0.02 1.62 16 7 N -0.76 -13.92 5.62 -58.69 -0.33 -14.25 16 8 C 0.22 5.17 6.64 -83.86 -0.56 4.61 16 9 C -0.30 -7.06 9.32 -39.08 -0.36 -7.42 16 10 C -0.08 -1.84 10.01 -39.70 -0.40 -2.24 16 11 C -0.20 -5.40 8.70 -38.84 -0.34 -5.73 16 12 C 0.14 3.93 5.57 -106.85 -0.60 3.33 16 13 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 2.01 5.14 -17.35 -0.09 1.93 16 16 N -0.79 -21.04 10.96 55.55 0.61 -20.43 16 17 Si 0.91 19.09 29.60 -169.99 -5.03 14.06 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.29 -7.39 9.63 -38.67 -0.37 -7.76 16 22 H 0.11 0.91 6.56 -52.49 -0.34 0.56 16 23 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 24 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.38 3.63 8.28 45.56 0.38 4.00 16 26 H 0.05 0.77 7.93 -51.93 -0.41 0.35 16 27 H 0.06 0.87 7.95 -51.93 -0.41 0.45 16 28 H 0.39 6.87 8.35 -40.82 -0.34 6.53 16 29 H 0.08 1.73 6.70 -52.49 -0.35 1.38 16 30 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.11 3.17 6.15 -52.49 -0.32 2.85 16 32 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -29.35 283.57 -7.48 -36.83 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -3.47 Total: 13.56 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -3.11 Total: -26.86 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.28 Total: -34.68 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.42 Total: -7.19 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.35 -7.48 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253592680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.729 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds