Wall clock time and date at job start Sun Mar 29 2020 21:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99646 * 2 1 4 4 H 1.09001 * 109.47438 * 245.00457 * 3 2 1 5 5 O 1.42902 * 109.47053 * 5.00159 * 3 2 1 6 6 C 1.52995 * 109.47178 * 124.99883 * 3 2 1 7 7 N 1.46501 * 109.47444 * 180.02562 * 6 3 2 8 8 C 1.39683 * 120.00285 * 179.97438 * 7 6 3 9 9 C 1.39337 * 119.95034 * 359.73405 * 8 7 6 10 10 C 1.38478 * 120.42172 * 179.72058 * 9 8 7 11 11 C 1.37683 * 120.32686 * 0.55005 * 10 9 8 12 12 C 1.40750 * 119.89324 * 359.72309 * 11 10 9 13 13 C 1.41405 * 120.21231 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00531 * 204.44988 * 13 12 11 15 15 C 1.39931 * 119.99781 * 24.44847 * 13 12 11 16 16 N 1.30828 * 119.99896 * 17.90048 * 15 13 12 17 17 Si 1.86798 * 120.00090 * 197.89133 * 15 13 12 18 18 H 1.48501 * 109.46910 * 60.00557 * 17 15 13 19 19 H 1.48505 * 109.47239 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47344 * 300.00318 * 17 15 13 21 21 C 1.38277 * 119.95016 * 180.02562 * 8 7 6 22 22 H 1.07996 * 120.00340 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99594 * 179.97438 * 1 2 3 24 24 H 1.07990 * 120.00684 * 180.02562 * 2 1 3 25 25 H 0.96703 * 114.00028 * 59.99642 * 5 3 2 26 26 H 1.09001 * 109.47404 * 300.00594 * 6 3 2 27 27 H 1.09002 * 109.46801 * 60.00144 * 6 3 2 28 28 H 0.97003 * 119.99616 * 0.02562 * 7 6 3 29 29 H 1.08001 * 119.78903 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.83495 * 180.27503 * 10 9 8 31 31 H 1.07998 * 120.05633 * 179.74665 * 11 10 9 32 32 H 0.97001 * 120.00408 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.16549 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6212 1.4028 -0.9314 5 8 1.1392 2.3887 0.1175 6 6 3.0350 1.3333 1.1816 7 7 3.7670 2.6023 1.1820 8 6 4.7166 2.8605 2.1733 9 6 4.9629 1.9128 3.1645 10 6 5.9062 2.1562 4.1486 11 6 6.6036 3.3433 4.1647 12 6 6.3615 4.3125 3.1733 13 6 7.0743 5.5338 3.1831 14 1 6.6526 6.4090 2.7114 15 6 8.3261 5.6083 3.8040 16 7 8.9945 4.5136 4.0619 17 14 9.0429 7.2707 4.2643 18 1 8.1303 7.9575 5.2134 19 1 10.3692 7.0780 4.9039 20 1 9.1992 8.0982 3.0412 21 6 5.4065 4.0589 2.1730 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 0.6073 2.3663 0.9248 26 1 2.4772 1.2356 2.1130 27 1 3.7400 0.5068 1.0920 28 1 3.5917 3.2635 0.4942 29 1 4.4174 0.9806 3.1630 30 1 6.0927 1.4131 4.9098 31 1 7.3354 3.5302 4.9366 32 1 9.8621 4.5652 4.4926 33 1 5.2134 4.7960 1.4077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253592680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:42 Heat of formation + Delta-G solvation = -33.568815 kcal Electronic energy + Delta-G solvation = -15422.852702 eV Core-core repulsion = 12833.536137 eV Total energy + Delta-G solvation = -2589.316565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93758 -38.94301 -36.36471 -34.74559 -33.66744 -31.69601 -30.75128 -27.88782 -27.14072 -24.21618 -22.60456 -21.86098 -20.76639 -19.13016 -17.85689 -17.42481 -17.12063 -16.72285 -16.33853 -15.88381 -15.45016 -14.69167 -14.40550 -14.29101 -13.96607 -13.66979 -13.33522 -12.95200 -12.78703 -12.73566 -12.47164 -12.18189 -12.01659 -11.68312 -11.24096 -11.20518 -11.04229 -10.48035 -10.32586 -9.34576 -8.61020 -7.94807 -6.33003 1.05250 1.30626 1.34257 1.39428 1.50942 1.60892 2.23125 2.73857 2.80553 3.46391 3.84275 3.85394 4.05025 4.19352 4.42240 4.49164 4.66861 4.74596 4.91382 5.05850 5.13063 5.16364 5.23059 5.41160 5.57940 5.65851 5.77693 5.93695 6.02250 6.19593 6.30539 6.61997 6.69430 6.88801 7.01995 7.04498 7.23982 8.37296 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.057816 B = 0.004733 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.178093 B = 5914.970273 C = 6263.723992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.200 4.200 3 C 0.132 3.868 4 H 0.109 0.891 5 O -0.567 6.567 6 C 0.110 3.890 7 N -0.750 5.750 8 C 0.232 3.768 9 C -0.305 4.305 10 C -0.075 4.075 11 C -0.233 4.233 12 C 0.113 3.887 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.315 4.315 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.386 0.614 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.396 0.604 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -6.572 -4.539 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.219 4.219 3 C 0.073 3.927 4 H 0.126 0.874 5 O -0.375 6.375 6 C -0.015 4.015 7 N -0.382 5.382 8 C 0.131 3.869 9 C -0.328 4.328 10 C -0.094 4.094 11 C -0.254 4.254 12 C 0.110 3.890 13 C -0.535 4.535 14 H 0.090 0.910 15 C -0.178 4.178 16 N -0.449 5.449 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.339 4.339 22 H 0.124 0.876 23 H 0.134 0.866 24 H 0.147 0.853 25 H 0.236 0.764 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.809 -6.704 -4.982 13.660 hybrid contribution 0.374 0.651 0.510 0.908 sum -10.435 -6.053 -4.472 12.866 Atomic orbital electron populations 1.24035 0.95767 1.03268 0.97870 1.23516 0.97139 0.98339 1.02873 1.21024 0.88513 0.85363 0.97840 0.87364 1.86560 1.54848 1.48744 1.47333 1.21856 0.94327 0.86668 0.98664 1.44398 1.42978 1.19861 1.31004 1.17559 0.88144 0.92785 0.88424 1.20162 1.09450 1.01291 1.01932 1.20738 0.95135 0.96076 0.97407 1.21114 1.05458 0.96707 1.02078 1.17699 0.89477 0.92758 0.89029 1.19799 1.02821 0.96955 1.33929 0.91014 1.26766 0.96540 1.02084 0.92436 1.69911 1.12229 1.31558 1.31182 0.85259 0.77669 0.77266 0.79495 1.18516 1.18996 1.18422 1.20527 1.10055 0.98850 1.04479 0.87605 0.86553 0.85337 0.76385 0.92578 0.92002 0.76961 0.86888 0.87266 0.88509 0.90205 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 13.91 67.78 0.94 -1.57 16 2 C -0.20 -3.35 9.51 25.65 0.24 -3.11 16 3 C 0.13 2.79 3.60 29.85 0.11 2.90 16 4 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 5 O -0.57 -12.64 11.93 -148.98 -1.78 -14.42 16 6 C 0.11 2.93 4.55 86.38 0.39 3.33 16 7 N -0.75 -26.48 5.62 -339.58 -1.91 -28.39 16 8 C 0.23 10.58 6.64 38.16 0.25 10.83 16 9 C -0.31 -13.74 9.32 22.59 0.21 -13.53 16 10 C -0.07 -3.64 10.01 22.20 0.22 -3.41 16 11 C -0.23 -12.96 8.70 22.75 0.20 -12.76 16 12 C 0.11 6.50 5.57 -21.31 -0.12 6.38 16 13 C -0.51 -28.76 9.05 23.46 0.21 -28.55 16 14 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 15 C 0.04 1.93 5.14 85.25 0.44 2.37 16 16 N -0.82 -44.77 10.96 21.82 0.24 -44.53 16 17 Si 0.98 39.54 29.60 68.60 2.03 41.57 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.31 -16.46 9.63 22.86 0.22 -16.24 16 22 H 0.11 1.52 6.56 -2.91 -0.02 1.50 16 23 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 24 H 0.13 1.86 8.06 -2.92 -0.02 1.84 16 25 H 0.39 6.60 8.28 -74.06 -0.61 5.98 16 26 H 0.06 1.49 7.93 -2.39 -0.02 1.47 16 27 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 28 H 0.40 13.46 8.35 -92.71 -0.77 12.69 16 29 H 0.11 4.36 6.70 -2.91 -0.02 4.35 16 30 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 31 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 32 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 33 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -64.06 283.57 1.64 -62.42 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.27 Total: 36.70 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 3.32 Total: -53.36 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.67 Total: -72.92 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.78 Total: -14.42 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -64.06 1.64 -62.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253592680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.854 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds