Wall clock time and date at job start Sun Mar 29 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48494 * 109.47112 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47530 * 119.99718 * 3 2 1 6 6 H 1.48506 * 109.46839 * 239.99403 * 3 2 1 7 7 C 1.39918 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00300 * 154.66229 * 7 2 1 9 9 C 1.41312 * 119.99954 * 334.65999 * 7 2 1 10 10 C 1.40781 * 120.21662 * 334.33352 * 9 7 2 11 11 C 1.36552 * 119.77717 * 179.74008 * 10 9 7 12 12 C 1.38962 * 120.21718 * 0.55766 * 11 10 9 13 13 F 1.35099 * 119.78180 * 179.71472 * 12 11 10 14 14 C 1.38930 * 120.43915 * 359.69317 * 12 11 10 15 15 C 1.36577 * 120.21961 * 0.02562 * 14 12 11 16 16 C 1.50704 * 120.11318 * 179.97438 * 15 14 12 17 17 F 1.39905 * 109.46837 * 0.02562 * 16 15 14 18 18 F 1.39896 * 109.47166 * 120.01938 * 16 15 14 19 19 F 1.39902 * 109.47154 * 240.02433 * 16 15 14 20 20 H 0.97000 * 119.99821 * 174.18920 * 1 2 3 21 21 H 1.08007 * 120.11288 * 0.02562 * 10 9 7 22 22 H 1.07992 * 119.89388 * 180.27583 * 11 10 9 23 23 H 1.07998 * 119.88875 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0962 1.6965 1.2125 6 1 3.0964 1.6963 -1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0102 -1.2569 -0.3997 9 6 1.4035 -2.3764 0.5248 10 6 0.3918 -2.2727 1.4983 11 6 -0.1900 -3.4038 1.9949 12 6 0.2216 -4.6547 1.5510 13 9 -0.3561 -5.7682 2.0525 14 6 1.2229 -4.7677 0.5945 15 6 1.8130 -3.6480 0.0815 16 6 2.8993 -3.7734 -0.9555 17 9 3.1276 -5.1261 -1.2304 18 9 2.5031 -3.1199 -2.1273 19 9 4.0756 -3.1909 -0.4715 20 1 -0.4850 -0.8357 -0.0851 21 1 0.0736 -1.3015 1.8477 22 1 -0.9694 -3.3263 2.7384 23 1 1.5355 -5.7443 0.2556 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002600099.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:21 Heat of formation + Delta-G solvation = -208.503962 kcal Electronic energy + Delta-G solvation = -16529.320798 eV Core-core repulsion = 13033.549675 eV Total energy + Delta-G solvation = -3495.771124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.98393 -49.45377 -48.53181 -48.38799 -39.82951 -35.95310 -32.80059 -31.27438 -27.68033 -26.29187 -23.31878 -22.75325 -20.27614 -19.32811 -19.29350 -19.06529 -17.04709 -16.86256 -16.60704 -16.23709 -15.70859 -15.38683 -15.34757 -15.04720 -14.85356 -14.63215 -14.56477 -14.39905 -13.67418 -13.57879 -13.17887 -12.86959 -12.66662 -11.99425 -11.78014 -11.61485 -11.01706 -10.16661 -9.66119 -9.38562 -6.72495 0.33771 0.54992 1.52489 1.58927 1.81860 1.93556 2.26421 2.39294 3.05818 3.08092 3.32764 3.73497 3.80642 4.03948 4.21874 4.67213 4.76248 5.04643 5.23651 5.41603 5.49906 5.60044 5.85171 6.01839 6.41132 6.58405 7.82264 Molecular weight = 234.04amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.012476 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.638215 B = 2243.738921 C = 3189.143657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.011 3.989 3 Si 1.112 2.888 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.086 0.914 9 C 0.096 3.904 10 C -0.199 4.199 11 C -0.082 4.082 12 C -0.069 4.069 13 F -0.161 7.161 14 C -0.054 4.054 15 C -0.311 4.311 16 C 0.529 3.471 17 F -0.187 7.187 18 F -0.187 7.187 19 F -0.187 7.187 20 H 0.291 0.709 21 H 0.118 0.882 22 H 0.137 0.863 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -1.020 0.101 2.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.209 4.209 3 Si 0.928 3.072 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.104 0.896 9 C 0.092 3.908 10 C -0.218 4.218 11 C -0.101 4.101 12 C -0.089 4.089 13 F -0.140 7.140 14 C -0.073 4.073 15 C -0.314 4.314 16 C 0.475 3.525 17 F -0.168 7.168 18 F -0.168 7.168 19 F -0.169 7.169 20 H 0.104 0.896 21 H 0.136 0.864 22 H 0.155 0.845 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.529 0.557 0.138 2.593 hybrid contribution 0.102 -2.177 -0.201 2.188 sum 2.631 -1.620 -0.063 3.090 Atomic orbital electron populations 1.70592 1.08789 1.33945 1.27159 1.28503 0.95546 1.07365 0.89512 0.83057 0.75001 0.69693 0.79465 1.19015 1.18261 1.18405 1.21101 1.03425 0.94713 1.34509 0.89574 1.17585 0.91193 0.91637 0.90337 1.20824 1.02430 0.97783 1.00752 1.20780 0.99185 0.90896 0.99244 1.17113 1.03344 0.82353 1.06074 1.91328 1.84200 1.51327 1.87164 1.20290 0.94142 0.98260 0.94616 1.19264 1.08228 0.95587 1.08305 1.17963 0.81394 0.72310 0.80815 1.93069 1.95288 1.33925 1.94525 1.93135 1.90848 1.81690 1.51131 1.93110 1.51127 1.84548 1.88097 0.89585 0.86365 0.84477 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.74 12.32 21.82 0.27 -37.47 14 2 C 0.01 0.51 4.94 85.25 0.42 0.94 14 3 Si 1.11 38.84 30.00 68.60 2.06 40.90 14 4 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 14 6 H -0.26 -8.57 7.11 99.48 0.71 -7.86 14 7 C -0.51 -24.97 7.75 23.43 0.18 -24.79 14 8 H 0.09 4.20 6.10 -2.91 -0.02 4.18 14 9 C 0.10 4.70 5.28 -21.29 -0.11 4.59 14 10 C -0.20 -9.16 7.90 22.50 0.18 -8.98 14 11 C -0.08 -3.45 9.96 22.05 0.22 -3.23 14 12 C -0.07 -2.96 7.32 22.61 0.17 -2.80 14 13 F -0.16 -6.53 17.26 44.97 0.78 -5.76 14 14 C -0.05 -2.33 9.36 22.05 0.21 -2.12 14 15 C -0.31 -14.36 5.39 -19.64 -0.11 -14.47 14 16 C 0.53 22.86 2.82 71.24 0.20 23.06 14 17 F -0.19 -7.28 15.96 44.97 0.72 -6.56 14 18 F -0.19 -8.33 16.49 44.97 0.74 -7.59 14 19 F -0.19 -8.07 15.68 44.97 0.71 -7.36 14 20 H 0.29 14.52 6.69 -92.71 -0.62 13.90 14 21 H 0.12 5.48 6.50 -2.91 -0.02 5.46 14 22 H 0.14 4.93 8.06 -2.91 -0.02 4.90 14 23 H 0.13 5.18 7.12 -2.91 -0.02 5.16 14 Total: -1.00 -50.08 224.23 8.04 -42.04 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.42 Total: 9.59 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 1.35 Total: -27.80 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.27 Total: -37.47 kcal Atomic # 9 Polarization: -30.21 SS G_CDS: 2.94 Total: -27.26 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.06 Total: 40.90 kcal Total: -50.08 8.04 -42.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002600099.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.462 kcal (2) G-P(sol) polarization free energy of solvation -50.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds