Wall clock time and date at job start Sun Mar 29 2020 21:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.38009 * 119.99976 * 179.97438 * 10 9 7 12 12 N 1.28891 * 124.81754 * 359.70020 * 11 10 9 13 13 C 1.34808 * 117.87701 * 179.83840 * 12 11 10 14 14 C 1.41104 * 128.73120 * 180.14820 * 13 12 11 15 15 C 1.37206 * 120.43410 * 180.30430 * 14 13 12 16 16 C 1.38705 * 120.59938 * 359.97438 * 15 14 13 17 17 C 1.37729 * 119.97407 * 0.02562 * 16 15 14 18 18 C 1.39253 * 120.20574 * 359.97438 * 17 16 15 19 19 S 1.75803 * 124.81671 * 180.02562 * 11 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 24 24 H 1.07992 * 119.78272 * 0.28239 * 14 13 12 25 25 H 1.08006 * 119.69990 * 180.02562 * 15 14 13 26 26 H 1.07999 * 120.01819 * 180.02562 * 16 15 14 27 27 H 1.08004 * 119.89772 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7428 -4.9138 0.0011 12 7 0.4999 -5.2549 0.0071 13 6 0.2074 -6.5709 0.0034 14 6 -1.0587 -7.1938 0.0056 15 6 -1.1600 -8.5622 0.0073 16 6 -0.0215 -9.3545 0.0063 17 6 1.2248 -8.7682 0.0042 18 6 1.3465 -7.3810 0.0025 19 16 2.7690 -6.3413 0.0018 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 3.1566 -3.4355 0.0009 24 1 -1.9538 -6.5897 0.0063 25 1 -2.1352 -9.0265 0.0085 26 1 -0.1122 -10.4306 0.0073 27 1 2.1104 -9.3863 0.0039 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003121919.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:42 Heat of formation + Delta-G solvation = 31.128517 kcal Electronic energy + Delta-G solvation = -13129.412918 eV Core-core repulsion = 10784.395706 eV Total energy + Delta-G solvation = -2345.017212 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 234.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02155 -38.46809 -36.24022 -34.49826 -31.86812 -30.42128 -28.94758 -25.47041 -24.38756 -23.53735 -21.45442 -19.99211 -18.70476 -17.57463 -17.38027 -16.58676 -16.17042 -16.13241 -15.42494 -15.05096 -14.58321 -14.56234 -14.14470 -13.37749 -13.05071 -12.91160 -12.67817 -12.64078 -12.23767 -11.78471 -11.48650 -11.01382 -10.94588 -10.47751 -10.44138 -9.07748 -8.57125 -8.32829 -6.49425 -0.24201 0.00490 0.27628 0.69046 1.41569 1.42257 1.55815 1.60172 2.27499 2.44658 2.86728 3.02358 3.54227 3.86701 4.20533 4.42636 4.48207 4.66801 4.97424 5.02860 5.21023 5.25120 5.37769 5.46376 5.53777 5.74910 5.86288 6.05532 6.38440 6.63772 7.12407 7.24771 8.79217 Molecular weight = 234.05amu Principal moments of inertia in cm(-1) A = 0.054158 B = 0.005386 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.877380 B = 5197.359676 C = 5699.091524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.285 3.715 10 N -0.668 5.668 11 C 0.371 3.629 12 N -0.600 5.600 13 C 0.103 3.897 14 C -0.119 4.119 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.061 4.061 18 C -0.218 4.218 19 S 0.045 5.955 20 H 0.270 0.730 21 H -0.006 1.006 22 H -0.007 1.007 23 H 0.419 0.581 24 H 0.124 0.876 25 H 0.166 0.834 26 H 0.173 0.827 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -17.172 0.003 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.598 4.598 8 H 0.099 0.901 9 C 0.161 3.839 10 N -0.305 5.305 11 C -0.006 4.006 12 N -0.329 5.329 13 C -0.017 4.017 14 C -0.141 4.141 15 C -0.104 4.104 16 C -0.142 4.142 17 C -0.084 4.084 18 C -0.337 4.337 19 S 0.294 5.706 20 H 0.079 0.921 21 H 0.011 0.989 22 H 0.011 0.989 23 H 0.257 0.743 24 H 0.142 0.858 25 H 0.184 0.816 26 H 0.191 0.809 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.782 -16.572 0.008 16.998 hybrid contribution -0.466 1.148 -0.004 1.239 sum 3.316 -15.424 0.004 15.777 Atomic orbital electron populations 1.70129 1.08109 1.28592 1.49612 1.26000 0.95801 1.03656 0.93727 0.85118 0.78983 0.77359 0.77803 1.17917 1.20304 1.20293 1.21608 0.94289 0.90560 1.53389 0.90087 1.18639 0.87961 0.82720 0.94598 1.44587 1.10286 0.99979 1.75622 1.24245 0.90381 0.91540 0.94451 1.66313 1.17251 1.18113 1.31255 1.19347 0.95945 0.85459 1.00927 1.20865 0.93715 0.95987 1.03515 1.21312 1.01070 0.91247 0.96797 1.21460 0.90465 1.01715 1.00567 1.20682 1.00183 0.89332 0.98236 1.23647 0.94236 1.00020 1.15845 1.84300 1.08014 0.96899 1.81384 0.92124 0.98855 0.98871 0.74251 0.85835 0.81625 0.80921 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.21 15 2 C 0.01 0.47 5.46 84.66 0.46 0.93 15 3 Si 0.98 42.52 29.54 68.60 2.03 44.55 15 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 6 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 7 C -0.56 -30.74 9.28 25.60 0.24 -30.50 15 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 15 9 C 0.29 15.71 5.68 85.63 0.49 16.20 15 10 N -0.67 -29.92 5.68 -351.70 -2.00 -31.92 15 11 C 0.37 15.87 8.26 179.75 1.48 17.36 15 12 N -0.60 -27.77 10.13 -189.23 -1.92 -29.69 15 13 C 0.10 3.96 6.94 39.76 0.28 4.23 15 14 C -0.12 -3.71 10.10 22.73 0.23 -3.48 15 15 C -0.08 -1.78 9.99 22.14 0.22 -1.56 15 16 C -0.12 -2.23 10.05 22.26 0.22 -2.00 15 17 C -0.06 -1.42 10.06 22.39 0.23 -1.20 15 18 C -0.22 -7.06 6.52 22.89 0.15 -6.91 15 19 S 0.05 1.47 23.39 -56.49 -1.32 0.15 15 20 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 21 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 23 H 0.42 16.15 8.44 -92.71 -0.78 15.37 15 24 H 0.12 3.83 8.06 -2.91 -0.02 3.80 15 25 H 0.17 2.21 8.06 -2.91 -0.02 2.19 15 26 H 0.17 1.66 8.06 -2.91 -0.02 1.64 15 27 H 0.15 2.56 8.06 -2.91 -0.02 2.54 15 Total: -1.00 -69.22 258.52 1.48 -67.74 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.41 Total: 11.33 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 3.99 Total: -6.94 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.63 Total: -116.82 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.32 Total: 0.15 kcal Total: -69.22 1.48 -67.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003121919.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.866 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds