Wall clock time and date at job start Sun Mar 29 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99702 * 3 2 1 6 6 H 1.48496 * 109.47569 * 59.99688 * 3 2 1 7 7 C 1.40045 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 N 1.40100 * 119.99901 * 179.72542 * 11 9 7 13 13 C 1.37775 * 119.99877 * 179.97438 * 12 11 9 14 14 N 1.30245 * 120.00021 * 0.02562 * 13 12 11 15 15 C 1.48079 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.39904 * 120.55132 * 179.72798 * 15 13 12 17 17 C 1.38385 * 118.30135 * 179.73470 * 16 15 13 18 18 C 1.38331 * 119.29206 * 0.53491 * 17 16 15 19 19 N 1.31906 * 121.05175 * 359.72358 * 18 17 16 20 20 C 1.31720 * 121.87247 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 23 23 H 0.97004 * 120.00056 * 0.02562 * 12 11 9 24 24 H 0.97001 * 119.99817 * 180.02562 * 14 13 12 25 25 H 1.08005 * 120.84619 * 359.97438 * 16 15 13 26 26 H 1.07999 * 120.35066 * 180.25955 * 17 16 15 27 27 H 1.07996 * 119.47318 * 179.74724 * 18 17 16 28 28 H 1.07996 * 119.71127 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4804 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 7 1.2484 -4.8610 0.0096 13 6 1.9372 -6.0542 0.0102 14 7 3.2396 -6.0542 0.0047 15 6 1.1968 -7.3366 0.0169 16 6 1.8846 -8.5548 0.0118 17 6 1.1462 -9.7252 0.0241 18 6 -0.2353 -9.6538 0.0296 19 7 -0.8565 -8.4902 0.0288 20 6 -0.1972 -7.3498 0.0222 21 1 -0.4849 0.8401 -0.0004 22 1 2.9189 -3.6477 0.0031 23 1 0.2783 -4.8609 0.0133 24 1 3.7246 -6.8943 0.0047 25 1 2.9643 -8.5812 0.0024 26 1 1.6432 -10.6840 0.0248 27 1 -0.8144 -10.5653 0.0350 28 1 -0.7414 -6.4170 0.0214 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004001861.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:03 Heat of formation + Delta-G solvation = 58.305292 kcal Electronic energy + Delta-G solvation = -15223.051098 eV Core-core repulsion = 12468.752239 eV Total energy + Delta-G solvation = -2754.298859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39472 -37.96649 -36.19549 -33.52155 -32.53598 -32.05155 -30.79392 -29.37537 -26.15157 -24.12052 -23.50669 -20.65121 -20.43749 -18.03487 -17.33241 -16.64010 -16.24933 -15.64719 -15.44603 -14.69746 -14.33368 -14.03172 -13.75023 -13.32585 -13.20408 -12.50876 -12.22576 -12.04424 -11.31969 -11.09916 -10.58953 -10.29705 -10.13852 -9.90324 -9.60832 -9.02142 -8.97204 -8.75036 -7.87699 -6.75278 -6.32217 -4.75366 0.60484 1.00939 2.93115 2.95109 3.10446 3.19507 3.25593 3.78436 4.08932 4.17216 4.47948 4.55261 4.61913 4.67798 4.80367 5.14099 5.24344 5.45625 5.68356 5.75262 5.84495 6.38753 6.68299 7.29618 7.34920 7.72311 7.93848 8.23984 8.40572 8.87897 8.93651 9.35492 10.45955 10.62637 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.061399 B = 0.004899 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.922505 B = 5713.832216 C = 6159.900991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.551 5.551 12 N -0.498 5.498 13 C 0.453 3.547 14 N -0.782 5.782 15 C -0.142 4.142 16 C -0.052 4.052 17 C -0.171 4.171 18 C 0.105 3.895 19 N -0.480 5.480 20 C 0.127 3.873 21 H 0.270 0.730 22 H 0.416 0.584 23 H 0.428 0.572 24 H 0.337 0.663 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -15.342 0.047 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.303 5.303 12 N -0.228 5.228 13 C 0.170 3.830 14 N -0.421 5.421 15 C -0.150 4.150 16 C -0.080 4.080 17 C -0.191 4.191 18 C -0.053 4.053 19 N -0.188 5.188 20 C -0.033 4.033 21 H 0.081 0.919 22 H 0.256 0.744 23 H 0.271 0.729 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.755 -14.289 0.044 14.397 hybrid contribution 1.164 -0.365 0.005 1.220 sum 2.919 -14.654 0.048 14.942 Atomic orbital electron populations 1.70028 1.07113 1.27570 1.34544 1.25716 0.94742 1.00410 0.92501 0.86173 0.80495 0.81042 0.78269 1.18541 1.20053 1.20060 1.20710 0.93928 0.87932 1.54328 0.90659 1.18627 0.87618 0.80895 0.76999 1.90607 1.13848 1.86043 1.56109 1.45719 1.07661 0.93979 1.82932 1.42887 1.06829 0.95957 1.77090 1.19398 0.89388 0.82725 0.91499 1.69282 1.04281 1.35233 1.33281 1.20851 0.95641 0.94239 1.04246 1.21580 1.00779 0.91172 0.94452 1.22067 0.95573 0.99053 1.02373 1.22945 0.92181 0.96158 0.93968 1.67700 1.41017 0.98359 1.11750 1.23047 0.90536 0.96937 0.92769 0.91886 0.74449 0.72873 0.84644 0.84352 0.84190 0.82386 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.28 11.83 55.55 0.66 -21.62 15 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 15 3 Si 0.92 19.72 29.56 -169.99 -5.02 14.70 15 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.53 -14.70 9.54 -35.63 -0.34 -15.04 15 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 15 9 C 0.55 15.53 7.86 -12.98 -0.10 15.43 15 10 O -0.58 -18.19 14.86 5.20 0.08 -18.11 15 11 N -0.55 -12.92 6.27 30.19 0.19 -12.73 15 12 N -0.50 -10.01 6.33 32.48 0.21 -9.80 15 13 C 0.45 7.69 7.94 -154.31 -1.23 6.46 15 14 N -0.78 -13.32 13.06 32.53 0.42 -12.89 15 15 C -0.14 -1.95 5.89 -104.80 -0.62 -2.57 15 16 C -0.05 -0.56 9.62 -38.90 -0.37 -0.93 15 17 C -0.17 -1.50 10.10 -39.49 -0.40 -1.90 15 18 C 0.11 1.04 11.17 -17.49 -0.20 0.85 15 19 N -0.48 -6.27 10.35 -12.94 -0.13 -6.41 15 20 C 0.13 1.74 10.73 -17.16 -0.18 1.56 15 21 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 22 H 0.42 9.27 7.93 -182.60 -1.45 7.82 15 23 H 0.43 8.42 6.14 -182.59 -1.12 7.30 15 24 H 0.34 4.71 6.84 -40.82 -0.28 4.43 15 25 H 0.14 1.22 6.52 -52.48 -0.34 0.87 15 26 H 0.14 0.76 8.06 -52.49 -0.42 0.34 15 27 H 0.16 1.05 8.06 -52.49 -0.42 0.62 15 28 H 0.16 2.16 6.43 -52.49 -0.34 1.83 15 LS Contribution 258.03 15.07 3.89 3.89 Total: -1.00 -34.06 258.03 -7.17 -41.22 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -3.92 Total: 15.63 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.53 Total: 6.14 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 1.34 Total: -63.46 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.06 -7.17 -41.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004001861.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.528 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds