Wall clock time and date at job start Sun Mar 29 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99702 * 3 2 1 6 6 H 1.48496 * 109.47569 * 59.99688 * 3 2 1 7 7 C 1.40045 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 N 1.40100 * 119.99901 * 179.72542 * 11 9 7 13 13 C 1.37775 * 119.99877 * 179.97438 * 12 11 9 14 14 N 1.30245 * 120.00021 * 0.02562 * 13 12 11 15 15 C 1.48079 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.39904 * 120.55132 * 179.72798 * 15 13 12 17 17 C 1.38385 * 118.30135 * 179.73470 * 16 15 13 18 18 C 1.38331 * 119.29206 * 0.53491 * 17 16 15 19 19 N 1.31906 * 121.05175 * 359.72358 * 18 17 16 20 20 C 1.31720 * 121.87247 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 23 23 H 0.97004 * 120.00056 * 0.02562 * 12 11 9 24 24 H 0.97001 * 119.99817 * 180.02562 * 14 13 12 25 25 H 1.08005 * 120.84619 * 359.97438 * 16 15 13 26 26 H 1.07999 * 120.35066 * 180.25955 * 17 16 15 27 27 H 1.07996 * 119.47318 * 179.74724 * 18 17 16 28 28 H 1.07996 * 119.71127 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4804 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 7 1.2484 -4.8610 0.0096 13 6 1.9372 -6.0542 0.0102 14 7 3.2396 -6.0542 0.0047 15 6 1.1968 -7.3366 0.0169 16 6 1.8846 -8.5548 0.0118 17 6 1.1462 -9.7252 0.0241 18 6 -0.2353 -9.6538 0.0296 19 7 -0.8565 -8.4902 0.0288 20 6 -0.1972 -7.3498 0.0222 21 1 -0.4849 0.8401 -0.0004 22 1 2.9189 -3.6477 0.0031 23 1 0.2783 -4.8609 0.0133 24 1 3.7246 -6.8943 0.0047 25 1 2.9643 -8.5812 0.0024 26 1 1.6432 -10.6840 0.0248 27 1 -0.8144 -10.5653 0.0350 28 1 -0.7414 -6.4170 0.0214 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004001861.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:02 Heat of formation + Delta-G solvation = 32.207939 kcal Electronic energy + Delta-G solvation = -15224.182764 eV Core-core repulsion = 12468.752239 eV Total energy + Delta-G solvation = -2755.430525 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.35061 -39.76528 -37.85416 -35.12842 -34.49852 -33.15002 -31.90772 -31.04645 -28.13722 -25.20428 -24.41893 -22.40019 -22.01784 -19.50715 -18.83505 -17.92222 -17.69450 -17.13000 -16.82100 -16.27120 -15.52347 -15.46913 -14.95448 -14.92579 -14.52223 -14.09906 -13.72919 -13.25624 -13.06598 -12.79695 -12.69165 -11.98152 -11.37934 -10.95912 -10.90357 -10.74746 -10.26361 -10.05262 -9.97306 -8.52940 -8.36556 -6.89797 -0.34461 0.16058 1.33208 1.41790 1.47758 1.63449 1.73674 2.29039 2.42352 2.81989 3.21399 3.51182 3.55868 3.61654 3.76055 3.86023 3.97824 4.45480 4.64665 4.84645 5.02965 5.20637 5.29718 5.57549 5.58627 5.99702 6.35640 6.74906 6.81768 6.84730 7.37010 7.52615 8.40442 8.59785 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.061399 B = 0.004899 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.922505 B = 5713.832216 C = 6159.900991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.031 3.969 3 Si 1.005 2.995 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.092 0.908 9 C 0.539 3.461 10 O -0.627 6.627 11 N -0.546 5.546 12 N -0.513 5.513 13 C 0.456 3.544 14 N -0.796 5.796 15 C -0.161 4.161 16 C -0.050 4.050 17 C -0.153 4.153 18 C 0.106 3.894 19 N -0.506 5.506 20 C 0.112 3.888 21 H 0.278 0.722 22 H 0.421 0.579 23 H 0.427 0.573 24 H 0.354 0.646 25 H 0.160 0.840 26 H 0.186 0.814 27 H 0.195 0.805 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -16.942 0.051 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.185 4.185 3 Si 0.823 3.177 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.110 0.890 9 C 0.344 3.656 10 O -0.513 6.513 11 N -0.296 5.296 12 N -0.244 5.244 13 C 0.174 3.826 14 N -0.435 5.435 15 C -0.169 4.169 16 C -0.078 4.078 17 C -0.172 4.172 18 C -0.051 4.051 19 N -0.215 5.215 20 C -0.047 4.047 21 H 0.088 0.912 22 H 0.261 0.739 23 H 0.269 0.731 24 H 0.173 0.827 25 H 0.177 0.823 26 H 0.203 0.797 27 H 0.212 0.788 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.521 -15.961 0.048 16.345 hybrid contribution 0.653 -0.135 0.003 0.666 sum 4.174 -16.095 0.052 16.628 Atomic orbital electron populations 1.70170 1.09451 1.29295 1.35558 1.26978 0.95640 1.04800 0.91078 0.84862 0.79276 0.74885 0.78629 1.17006 1.19184 1.19197 1.21241 0.94952 0.88660 1.54824 0.89000 1.18908 0.87288 0.82438 0.76923 1.90559 1.15522 1.87043 1.58142 1.45191 1.07693 0.94917 1.81776 1.43007 1.06810 0.95518 1.79103 1.19657 0.89822 0.82741 0.90387 1.69196 1.04716 1.37025 1.32549 1.20641 0.95528 0.93573 1.07180 1.21919 1.01963 0.90525 0.93354 1.22531 0.94997 1.00067 0.99604 1.23680 0.93430 0.96176 0.91821 1.67717 1.41820 0.99060 1.12892 1.22900 0.90729 0.97178 0.93907 0.91209 0.73855 0.73106 0.82707 0.82295 0.79701 0.78787 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.89 11.83 21.84 0.26 -48.64 15 2 C 0.03 1.70 5.50 85.30 0.47 2.17 15 3 Si 1.00 40.34 29.56 68.60 2.03 42.37 15 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 7 C -0.56 -31.53 9.54 24.83 0.24 -31.30 15 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 15 9 C 0.54 31.45 7.86 86.36 0.68 32.13 15 10 O -0.63 -40.99 14.86 -4.32 -0.06 -41.06 15 11 N -0.55 -26.47 6.27 -176.61 -1.11 -27.58 15 12 N -0.51 -21.46 6.33 -51.16 -0.32 -21.78 15 13 C 0.46 15.59 7.94 136.51 1.08 16.68 15 14 N -0.80 -26.54 13.06 -51.00 -0.67 -27.21 15 15 C -0.16 -4.35 5.89 -19.98 -0.12 -4.46 15 16 C -0.05 -0.93 9.62 22.71 0.22 -0.71 15 17 C -0.15 -2.03 10.10 22.33 0.23 -1.81 15 18 C 0.11 1.76 11.17 84.70 0.95 2.71 15 19 N -0.51 -12.75 10.35 -194.86 -2.02 -14.77 15 20 C 0.11 3.13 10.73 84.99 0.91 4.04 15 21 H 0.28 14.97 8.29 -92.71 -0.77 14.20 15 22 H 0.42 19.15 7.93 -213.32 -1.69 17.46 15 23 H 0.43 17.96 6.14 -213.32 -1.31 16.65 15 24 H 0.35 9.29 6.84 -92.71 -0.63 8.65 15 25 H 0.16 2.23 6.52 -2.91 -0.02 2.22 15 26 H 0.19 0.85 8.06 -2.91 -0.02 0.82 15 27 H 0.20 1.71 8.06 -2.91 -0.02 1.68 15 28 H 0.15 4.33 6.43 -2.91 -0.02 4.31 15 Total: -1.00 -76.64 258.03 0.37 -76.27 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -2.39 Total: 42.94 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 4.65 Total: 19.45 kcal Atomic # 7 Polarization: -136.12 SS G_CDS: -3.86 Total: -139.97 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.06 Total: -41.06 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -76.64 0.37 -76.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004001861.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.477 kcal (2) G-P(sol) polarization free energy of solvation -76.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds