Wall clock time and date at job start Sun Mar 29 2020 22:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47216 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47221 * 30.00285 * 3 2 1 6 6 H 1.48507 * 109.46998 * 149.99866 * 3 2 1 7 7 C 1.38729 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99820 * 180.02562 * 7 2 1 9 9 O 1.34772 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.35570 * 117.00082 * 185.05866 * 9 7 2 11 11 C 1.39186 * 119.89537 * 354.44286 * 10 9 7 12 12 C 1.37105 * 120.10282 * 179.70623 * 11 10 9 13 13 C 1.40046 * 119.89661 * 0.27384 * 12 11 10 14 14 C 1.46916 * 120.10411 * 180.02562 * 13 12 11 15 15 C 1.35139 * 120.00173 * 179.97438 * 14 13 12 16 16 C 1.41776 * 120.00289 * 180.02562 * 15 14 13 17 17 O 1.21652 * 119.99513 * 0.02562 * 16 15 14 18 18 O 1.34929 * 120.00141 * 180.02562 * 16 15 14 19 19 C 1.40057 * 119.79609 * 359.97438 * 13 12 11 20 20 C 1.37110 * 119.88948 * 0.02562 * 19 13 12 21 21 H 0.96998 * 119.99519 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.94524 * 359.97438 * 11 10 9 23 23 H 1.08002 * 120.05137 * 180.29793 * 12 11 10 24 24 H 1.07998 * 120.00051 * 0.02562 * 14 13 12 25 25 H 1.08003 * 120.00239 * 0.02562 * 15 14 13 26 26 H 0.96702 * 114.00520 * 180.02562 * 18 16 15 27 27 H 1.08000 * 120.05451 * 179.97438 * 19 13 12 28 28 H 1.07999 * 119.94208 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2015 -0.0005 8 1 3.0887 -1.2015 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0690 -3.5033 0.1054 11 6 3.4591 -3.4339 0.0911 12 6 4.2059 -4.5782 0.2040 13 6 3.5679 -5.8187 0.3282 14 6 4.3636 -7.0477 0.4501 15 6 3.7459 -8.2435 0.5703 16 6 4.5138 -9.4295 0.6885 17 8 5.7288 -9.3704 0.6821 18 8 3.8969 -10.6235 0.8080 19 6 2.1689 -5.8840 0.3369 20 6 1.4305 -4.7344 0.2234 21 1 -0.4849 0.8401 0.0004 22 1 3.9501 -2.4768 -0.0048 23 1 5.2844 -4.5229 0.1976 24 1 5.4423 -6.9953 0.4444 25 1 2.6671 -8.2960 0.5764 26 1 4.5028 -11.3735 0.8831 27 1 1.6725 -6.8385 0.4320 28 1 0.3516 -4.7837 0.2305 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004206632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:54 Heat of formation + Delta-G solvation = -102.468255 kcal Electronic energy + Delta-G solvation = -14896.556875 eV Core-core repulsion = 12070.700850 eV Total energy + Delta-G solvation = -2825.856025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24014 -40.83223 -38.61965 -37.03143 -34.85650 -34.10457 -32.05880 -30.07539 -27.60553 -25.56907 -23.78863 -22.65597 -20.66058 -19.74203 -19.19055 -18.78880 -17.73757 -16.52470 -16.52248 -16.24930 -16.02749 -15.65416 -15.14546 -14.81081 -14.47120 -14.08262 -13.59624 -13.39110 -13.16918 -12.73223 -12.62731 -12.52679 -12.24067 -12.13137 -11.62841 -11.23649 -11.17373 -10.63222 -9.94975 -8.76500 -8.54260 -6.20066 -0.48893 0.59115 0.96111 1.36410 1.45447 1.53607 2.14019 2.15904 2.51114 2.83530 3.14962 3.39118 3.88228 4.01114 4.06920 4.28310 4.42644 4.58157 4.62805 4.90155 4.98298 5.17565 5.26088 5.30617 5.55509 5.60148 5.61680 5.74352 5.95113 6.07095 6.89919 7.03174 7.65737 8.67494 Molecular weight = 234.07amu Principal moments of inertia in cm(-1) A = 0.071744 B = 0.004304 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.181609 B = 6504.155245 C = 6878.875938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.417 4.417 8 H 0.109 0.891 9 O -0.216 6.216 10 C 0.137 3.863 11 C -0.252 4.252 12 C -0.028 4.028 13 C -0.187 4.187 14 C 0.056 3.944 15 C -0.262 4.262 16 C 0.523 3.477 17 O -0.568 6.568 18 O -0.505 6.505 19 C -0.031 4.031 20 C -0.210 4.210 21 H 0.276 0.724 22 H 0.128 0.872 23 H 0.151 0.849 24 H 0.138 0.862 25 H 0.150 0.850 26 H 0.423 0.577 27 H 0.158 0.842 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 -12.122 1.080 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.493 4.493 8 H 0.126 0.874 9 O -0.120 6.120 10 C 0.084 3.916 11 C -0.271 4.271 12 C -0.046 4.046 13 C -0.187 4.187 14 C 0.038 3.962 15 C -0.281 4.281 16 C 0.374 3.626 17 O -0.464 6.464 18 O -0.316 6.316 19 C -0.049 4.049 20 C -0.230 4.230 21 H 0.085 0.915 22 H 0.146 0.854 23 H 0.169 0.831 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.283 0.717 27 H 0.175 0.825 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.207 -11.597 1.028 13.693 hybrid contribution 0.311 0.455 -0.008 0.551 sum 7.518 -11.142 1.020 13.480 Atomic orbital electron populations 1.70146 1.08112 1.29218 1.47314 1.26650 0.96839 1.02885 0.95389 0.84563 0.77896 0.74330 0.79335 1.18748 1.19646 1.17468 1.21944 0.92839 0.81092 1.53411 0.87409 1.83885 1.36398 1.12840 1.78913 1.20239 0.91664 0.87907 0.91798 1.21113 0.92953 1.00399 1.12600 1.21244 1.00409 0.90415 0.92530 1.18741 0.93180 0.92836 1.13977 1.22417 0.99770 0.90182 0.83861 1.21157 1.01876 0.89896 1.15132 1.19732 0.85848 0.85169 0.71883 1.90909 1.16880 1.88429 1.50222 1.85049 1.43644 1.17933 1.85016 1.21216 0.92855 0.97576 0.93256 1.20306 1.00492 0.90214 1.11951 0.91518 0.85433 0.83127 0.84404 0.83205 0.71720 0.82494 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.48 13.67 21.62 0.30 -53.18 15 2 C -0.02 -1.00 5.49 84.86 0.47 -0.53 15 3 Si 1.02 40.56 29.55 68.60 2.03 42.59 15 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 15 7 C -0.42 -22.94 9.48 67.94 0.64 -22.29 15 8 H 0.11 5.36 5.18 -2.91 -0.02 5.35 15 9 O -0.22 -12.25 9.74 -20.17 -0.20 -12.44 15 10 C 0.14 6.34 6.66 22.73 0.15 6.49 15 11 C -0.25 -10.08 9.12 22.23 0.20 -9.87 15 12 C -0.03 -0.89 9.76 22.44 0.22 -0.67 15 13 C -0.19 -5.52 5.87 -20.13 -0.12 -5.64 15 14 C 0.06 1.40 9.41 23.83 0.22 1.62 15 15 C -0.26 -6.05 9.33 22.43 0.21 -5.84 15 16 C 0.52 12.38 8.05 68.69 0.55 12.93 15 17 O -0.57 -16.63 16.84 19.34 0.33 -16.31 15 18 O -0.50 -8.93 13.54 -58.44 -0.79 -9.72 15 19 C -0.03 -0.96 9.38 22.45 0.21 -0.75 15 20 C -0.21 -8.23 9.95 22.23 0.22 -8.01 15 21 H 0.28 14.79 8.31 -92.71 -0.77 14.02 15 22 H 0.13 5.14 5.62 -2.91 -0.02 5.12 15 23 H 0.15 3.69 8.06 -2.91 -0.02 3.66 15 24 H 0.14 3.22 7.45 -2.91 -0.02 3.20 15 25 H 0.15 3.00 6.07 -2.91 -0.02 2.98 15 26 H 0.42 3.72 8.98 -74.06 -0.67 3.05 15 27 H 0.16 3.66 6.16 -2.91 -0.02 3.64 15 28 H 0.12 4.68 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -68.69 261.07 5.19 -63.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.55 Total: 18.14 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 2.98 Total: -32.57 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.30 Total: -53.18 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.66 Total: -38.48 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.69 5.19 -63.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004206632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.974 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds