Wall clock time and date at job start Sun Mar 29 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 N 1.46903 * 109.47135 * 119.99777 * 2 1 3 5 5 C 1.46903 * 111.00187 * 306.58014 * 4 2 1 6 6 C 1.50700 * 109.46793 * 287.24012 * 5 4 2 7 7 H 1.08001 * 120.00558 * 357.67039 * 6 5 4 8 8 C 1.37884 * 119.99539 * 177.67492 * 6 5 4 9 9 N 1.31514 * 119.99906 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99895 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47122 * 59.99679 * 10 8 6 12 12 H 1.48494 * 109.47211 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46997 * 300.00266 * 10 8 6 14 14 C 1.46896 * 111.00086 * 70.53475 * 4 2 1 15 15 C 1.50701 * 109.47174 * 74.70751 * 14 4 2 16 16 C 1.38237 * 120.00254 * 83.67138 * 15 14 4 17 17 C 1.38236 * 120.00235 * 179.97438 * 16 15 14 18 18 C 1.38232 * 119.99713 * 359.97094 * 17 16 15 19 19 C 1.38231 * 120.00463 * 0.28262 * 18 17 16 20 20 C 1.38232 * 120.00099 * 263.64488 * 15 14 4 21 21 H 1.08998 * 109.47552 * 308.12795 * 1 2 3 22 22 H 1.08999 * 109.47085 * 68.13200 * 1 2 3 23 23 H 1.09007 * 109.46964 * 188.12916 * 1 2 3 24 24 H 1.08996 * 109.47430 * 239.99476 * 2 1 3 25 25 H 1.09001 * 109.47256 * 171.71660 * 3 2 1 26 26 H 1.08997 * 109.46802 * 291.71236 * 3 2 1 27 27 H 1.09000 * 109.47195 * 51.71473 * 3 2 1 28 28 H 1.09001 * 109.46546 * 47.23712 * 5 4 2 29 29 H 1.08996 * 109.47006 * 167.24099 * 5 4 2 30 30 H 0.97007 * 119.99874 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47158 * 314.71097 * 14 4 2 32 32 H 1.08998 * 109.47353 * 194.70690 * 14 4 2 33 33 H 1.08000 * 119.99622 * 359.97176 * 16 15 14 34 34 H 1.07995 * 119.99877 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.99796 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00453 * 179.71938 * 19 18 17 37 37 H 1.08007 * 120.00163 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4246 -0.1231 2.4159 6 6 2.0327 1.2289 2.6871 7 1 2.8125 1.6091 2.0440 8 6 1.5934 1.9803 3.7565 9 7 0.6435 1.5174 4.5394 10 14 2.3476 3.6558 4.0932 11 1 2.1318 4.5405 2.9202 12 1 1.7057 4.2561 5.2901 13 1 3.8045 3.5029 4.3364 14 6 1.7643 -2.1366 1.1148 15 6 2.7364 -2.7628 0.1484 16 6 4.0021 -3.1195 0.5748 17 6 4.8936 -3.6944 -0.3115 18 6 4.5192 -3.9132 -1.6240 19 6 3.2554 -3.5518 -2.0518 20 6 2.3623 -2.9811 -1.1643 21 1 -0.3634 0.6345 0.8084 22 1 -0.3633 0.3828 -0.9537 23 1 -0.3633 -1.0174 0.1453 24 1 1.8933 -0.5139 -0.8899 25 1 3.1198 1.4461 0.1481 26 1 1.8026 1.9117 -0.9547 27 1 1.5607 1.9973 0.8066 28 1 0.3485 -0.0165 2.2783 29 1 1.6193 -0.7850 3.2597 30 1 0.3342 2.0462 5.2916 31 1 0.7455 -2.3055 0.7660 32 1 1.8904 -2.5862 2.0997 33 1 4.2943 -2.9489 1.6004 34 1 5.8825 -3.9726 0.0216 35 1 5.2159 -4.3620 -2.3166 36 1 2.9645 -3.7186 -3.0784 37 1 1.3734 -2.7025 -1.4975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019427250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:25 Heat of formation + Delta-G solvation = 14.195205 kcal Electronic energy + Delta-G solvation = -16574.997481 eV Core-core repulsion = 14123.585215 eV Total energy + Delta-G solvation = -2451.412267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44810 -38.85575 -34.74307 -33.50526 -31.74136 -31.42105 -29.26877 -27.80210 -25.99546 -24.10186 -23.30512 -22.13382 -20.21146 -18.51666 -17.42755 -16.92857 -16.59778 -16.15388 -15.90362 -15.34724 -14.92289 -14.57439 -14.16781 -14.05113 -13.62480 -13.48753 -13.11715 -13.05044 -12.84787 -12.62755 -12.54409 -12.36008 -12.06496 -11.88498 -11.78396 -11.74848 -11.18138 -10.89856 -10.48152 -9.70948 -9.55944 -8.86889 -8.11684 -6.15010 0.54401 0.60613 1.42626 1.44532 1.51969 2.44184 2.92833 3.19969 3.51089 3.94723 4.05401 4.20467 4.25674 4.34805 4.36975 4.44555 4.56974 4.66579 4.77455 4.83882 4.88273 5.00682 5.05765 5.13464 5.21757 5.26094 5.26751 5.33799 5.57806 5.66651 5.70203 5.76264 5.79158 5.87016 6.17049 6.22864 6.49167 6.73024 6.96785 7.48941 8.98594 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.006569 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.842679 B = 4261.540076 C = 4450.239888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 C -0.140 4.140 4 N -0.532 5.532 5 C 0.201 3.799 6 C -0.504 4.504 7 H 0.076 0.924 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.956 3.044 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.087 3.913 15 C -0.078 4.078 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.125 4.125 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.064 0.936 28 H -0.014 1.014 29 H -0.009 1.009 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -8.485 -13.074 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.019 4.019 3 C -0.197 4.197 4 N -0.256 5.256 5 C 0.075 3.925 6 C -0.542 4.542 7 H 0.094 0.906 8 C -0.198 4.198 9 N -0.580 5.580 10 Si 0.782 3.218 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.040 4.040 15 C -0.078 4.078 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.144 4.144 21 H 0.057 0.943 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.003 0.997 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.908 -8.359 -12.880 16.120 hybrid contribution -0.856 0.764 0.951 1.490 sum 4.052 -7.596 -11.929 14.711 Atomic orbital electron populations 1.22333 0.98062 1.00970 1.01853 1.21521 0.92375 0.95453 0.92556 1.22116 1.00544 0.95941 1.01110 1.62292 1.59143 1.01066 1.03122 1.19519 0.92556 0.94097 0.86320 1.21706 1.19637 1.01866 1.11037 0.90617 1.25803 0.95882 1.02056 0.96063 1.70088 1.30446 1.39566 1.17861 0.85624 0.78619 0.79931 0.77627 1.19128 1.21355 1.19741 1.21052 0.95868 0.89336 0.97777 1.19845 0.95266 0.97863 0.94866 1.21129 0.93601 0.98827 1.00200 1.21385 0.99836 0.99126 0.94063 1.21450 0.96923 1.00230 0.95972 1.21404 0.93904 0.98568 1.00214 1.21201 1.00477 1.00010 0.92687 0.94320 0.90786 0.93144 0.90252 0.93853 0.92449 0.91734 0.99657 0.99066 0.93132 0.94062 0.92152 0.87232 0.84400 0.83537 0.83703 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.27 8.32 71.98 0.60 -5.67 16 2 C 0.09 3.39 2.83 44.91 0.13 3.52 16 3 C -0.14 -5.51 7.69 71.98 0.55 -4.96 16 4 N -0.53 -23.00 4.42 -880.08 -3.89 -26.89 16 5 C 0.20 10.58 4.48 85.56 0.38 10.96 16 6 C -0.50 -27.93 6.67 25.60 0.17 -27.76 16 7 H 0.08 4.10 5.37 -2.91 -0.02 4.09 16 8 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 9 N -0.94 -56.55 13.29 21.45 0.28 -56.26 16 10 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.09 3.25 5.03 85.56 0.43 3.68 16 15 C -0.08 -2.49 4.99 -19.87 -0.10 -2.59 16 16 C -0.12 -3.65 9.73 22.27 0.22 -3.43 16 17 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 18 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 19 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 20 C -0.13 -3.37 8.39 22.27 0.19 -3.18 16 21 H 0.04 1.65 6.49 -2.39 -0.02 1.64 16 22 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.05 1.73 6.26 -2.38 -0.01 1.71 16 24 H 0.08 2.72 6.31 -2.39 -0.02 2.71 16 25 H 0.04 1.76 7.48 -2.39 -0.02 1.74 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.96 5.45 -2.39 -0.01 2.95 16 28 H -0.01 -0.80 5.69 -2.39 -0.01 -0.81 16 29 H -0.01 -0.51 7.68 -2.39 -0.02 -0.53 16 30 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 31 H 0.04 1.47 6.03 -2.39 -0.01 1.45 16 32 H 0.06 2.36 7.64 -2.39 -0.02 2.35 16 33 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.12 3.04 8.02 -2.91 -0.02 3.02 16 Total: -1.00 -62.88 291.52 3.16 -59.72 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.04 Total: 13.79 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.70 Total: -36.87 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.60 Total: -83.15 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.88 3.16 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019427250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds