Wall clock time and date at job start Sun Mar 29 2020 21:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 C 1.50700 * 109.47198 * 120.00417 * 2 1 3 5 5 C 1.38233 * 119.99976 * 119.99848 * 4 2 1 6 6 C 1.38237 * 119.99578 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00177 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00062 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46990 * 89.99891 * 8 7 6 10 10 C 1.46902 * 110.99573 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46656 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99768 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47238 * 60.00017 * 15 13 11 17 17 H 1.48494 * 109.47094 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46981 * 299.99863 * 15 13 11 19 19 C 1.38237 * 119.99882 * 0.25351 * 7 6 5 20 20 C 1.38230 * 119.99851 * 359.49431 * 19 7 6 21 21 H 1.09000 * 109.46629 * 299.99855 * 1 2 3 22 22 H 1.09007 * 109.47016 * 59.99606 * 1 2 3 23 23 H 1.08991 * 109.47295 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46629 * 240.00145 * 2 1 3 25 25 H 1.08998 * 109.47207 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46630 * 300.00091 * 3 2 1 27 27 H 1.08998 * 109.46764 * 60.00030 * 3 2 1 28 28 H 1.07999 * 120.00212 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.99878 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.47064 * 330.00168 * 8 7 6 31 31 H 1.09000 * 109.47099 * 209.99894 * 8 7 6 32 32 H 1.00896 * 111.00309 * 56.04484 * 9 8 7 33 33 H 1.08990 * 109.47358 * 299.99539 * 10 9 8 34 34 H 1.09004 * 109.47457 * 60.00221 * 10 9 8 35 35 H 0.96997 * 120.00560 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99515 * 179.73041 * 19 7 6 37 37 H 1.08001 * 119.99972 * 180.22884 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8271 -1.8344 1.1035 6 6 3.2874 -2.4864 2.2322 7 6 2.9534 -2.0141 3.4877 8 6 3.4548 -2.7253 4.7182 9 7 4.7493 -2.1576 5.1185 10 6 5.2701 -2.8284 6.3171 11 6 6.5962 -2.2211 6.6964 12 1 7.0104 -1.4170 6.1063 13 6 7.2801 -2.6913 7.7973 14 7 6.7750 -3.6695 8.5168 15 14 8.9235 -1.9381 8.2679 16 1 8.7425 -0.4912 8.5490 17 1 9.4500 -2.6162 9.4795 18 1 9.8846 -2.1085 7.1488 19 6 2.1548 -0.8930 3.6146 20 6 1.6988 -0.2380 2.4859 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.0876 -2.2036 0.1226 29 1 3.9079 -3.3647 2.1331 30 1 3.5751 -3.7866 4.5007 31 1 2.7367 -2.5995 5.5285 32 1 4.6782 -1.1616 5.2632 33 1 4.5648 -2.7037 7.1387 34 1 5.4031 -3.8904 6.1104 35 1 7.2563 -4.0006 9.2912 36 1 1.8904 -0.5266 4.5955 37 1 1.0779 0.6402 2.5850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:42 Heat of formation + Delta-G solvation = -0.406996 kcal Electronic energy + Delta-G solvation = -15457.002951 eV Core-core repulsion = 13004.957485 eV Total energy + Delta-G solvation = -2452.045466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50651 -36.21494 -34.55052 -32.44657 -30.73792 -30.04131 -27.28123 -26.83664 -24.38754 -22.69457 -21.77838 -21.17031 -19.80870 -16.72418 -16.08137 -15.37846 -15.01861 -14.58959 -14.36712 -13.83423 -13.73345 -13.53355 -13.30356 -13.03995 -12.60060 -12.45790 -11.94342 -11.82873 -11.44123 -11.26388 -11.14898 -11.11317 -10.79458 -10.69538 -10.55557 -10.45472 -9.91146 -9.20703 -8.69170 -8.48039 -8.31194 -7.28325 -6.02485 -4.04595 1.55641 1.63803 3.34622 3.38115 3.41631 3.95534 4.44608 4.62348 4.72770 5.07816 5.13235 5.18370 5.23414 5.33236 5.35726 5.46385 5.53722 5.63207 5.67428 5.67747 5.81719 5.86528 5.98802 6.09161 6.12015 6.14161 6.32720 6.34827 6.64876 6.78036 6.96512 7.22204 7.25849 7.41753 7.78613 8.12682 8.39552 8.60720 9.04426 9.60225 11.08609 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.047649 B = 0.004098 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.489868 B = 6830.990139 C = 7066.913245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.121 4.121 6 C -0.097 4.097 7 C -0.069 4.069 8 C 0.093 3.907 9 N -0.683 5.683 10 C 0.193 3.807 11 C -0.515 4.515 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.115 4.115 20 C -0.117 4.117 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.329 0.671 33 H -0.013 1.013 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 6.581 -15.347 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.116 4.116 7 C -0.070 4.070 8 C -0.036 4.036 9 N -0.314 5.314 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.133 4.133 20 C -0.135 4.135 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.146 0.854 33 H 0.005 0.995 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.752 6.054 -15.597 20.446 hybrid contribution 0.366 0.637 1.114 1.334 sum -11.386 6.691 -14.483 19.600 Atomic orbital electron populations 1.21852 0.94635 1.01886 1.01660 1.20087 0.95689 0.95980 0.95567 1.21857 1.01416 0.95212 1.01634 1.19750 0.98648 0.96103 0.94393 1.20998 0.98630 0.95880 0.98358 1.21039 0.98722 1.00090 0.91737 1.20030 0.96041 0.95539 0.95365 1.20891 0.91693 0.98564 0.92458 1.60726 1.22501 1.07907 1.40253 1.19585 0.94297 0.95052 0.84405 1.21150 1.04380 1.19021 1.10774 0.91990 1.24992 0.98214 0.95161 0.96206 1.69952 1.38967 1.26919 1.17981 0.86526 0.83700 0.79210 0.77765 1.20248 1.21331 1.20127 1.21054 0.98267 0.95610 0.98408 1.20836 1.00820 0.99845 0.91957 0.92499 0.92683 0.92611 0.90762 0.92432 0.92698 0.92473 0.86578 0.85985 0.90971 0.95499 0.85410 0.99546 0.95341 0.92840 0.86460 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 2 C -0.05 -0.52 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.28 9.01 37.16 0.33 -0.95 16 4 C -0.09 -1.08 4.78 -104.62 -0.50 -1.58 16 5 C -0.12 -1.57 9.67 -39.58 -0.38 -1.95 16 6 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 7 C -0.07 -1.11 5.39 -104.62 -0.56 -1.68 16 8 C 0.09 1.73 5.81 -4.97 -0.03 1.70 16 9 N -0.68 -15.19 6.48 -116.33 -0.75 -15.94 16 10 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16 11 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 15 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.11 -1.66 9.70 -39.58 -0.38 -2.05 16 20 C -0.12 -1.48 8.71 -39.59 -0.34 -1.83 16 21 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 28 H 0.12 1.27 7.95 -52.49 -0.42 0.85 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.07 1.33 8.09 -51.93 -0.42 0.92 16 31 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.33 7.10 8.72 -39.29 -0.34 6.76 16 33 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.12 1.24 7.10 -52.49 -0.37 0.87 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -30.36 309.40 -9.10 -39.46 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.08 Total: 1.70 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.65 Total: -20.38 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.02 Total: -42.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.36 -9.10 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.048 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds