Wall clock time and date at job start Sun Mar 29 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 5 5 C 1.46906 * 110.99888 * 274.99671 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47240 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00243 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46997 * 120.00167 * 12 10 8 15 15 H 1.48500 * 109.47074 * 240.00161 * 12 10 8 16 16 C 1.50703 * 109.46999 * 239.99872 * 2 1 3 17 17 C 1.38238 * 119.99810 * 279.72706 * 16 2 1 18 18 C 1.38244 * 119.99586 * 179.81054 * 17 16 2 19 19 C 1.38231 * 119.99850 * 0.39831 * 18 17 16 20 20 C 1.38233 * 120.00308 * 359.85440 * 19 18 17 21 21 C 1.38235 * 120.00111 * 359.95805 * 20 19 18 22 22 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 23 23 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 25 25 H 1.00902 * 111.00533 * 151.04078 * 4 2 1 26 26 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 28 28 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 29 29 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 30 30 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 31 31 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 32 32 H 0.96992 * 120.00032 * 179.97438 * 11 10 8 33 33 H 1.07995 * 120.00346 * 0.02562 * 17 16 2 34 34 H 1.07998 * 119.99986 * 180.23437 * 18 17 16 35 35 H 1.08004 * 120.00061 * 179.83723 * 19 18 17 36 36 H 1.08002 * 120.00350 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.00161 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5333 3.5744 7 6 2.6599 0.4196 4.7697 8 6 3.1653 -0.3246 5.9787 9 1 3.4157 -1.3724 5.9021 10 6 3.3091 0.3323 7.1823 11 7 3.0047 1.6084 7.2755 12 14 3.9350 -0.5904 8.6811 13 1 4.2036 -2.0043 8.3154 14 1 5.1887 0.0423 9.1640 15 1 2.9107 -0.5425 9.7552 16 6 2.0323 -0.7105 -1.2305 17 6 2.0719 -2.0919 -1.2632 18 6 2.5290 -2.7436 -2.3934 19 6 2.9541 -2.0138 -3.4877 20 6 2.9194 -0.6323 -3.4530 21 6 2.4587 0.0194 -2.3243 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.9172 -1.1207 1.0287 26 1 2.7589 1.0461 2.1182 27 1 1.0870 0.6163 2.5525 28 1 1.9183 -1.3566 3.8030 29 1 3.5904 -0.9273 3.3691 30 1 3.3364 1.2433 4.5415 31 1 1.6644 0.8134 4.9750 32 1 3.1055 2.0705 8.1223 33 1 1.7426 -2.6620 -0.4071 34 1 2.5565 -3.8229 -2.4204 35 1 3.3137 -2.5229 -4.3697 36 1 3.2519 -0.0621 -4.3078 37 1 2.4319 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:35 Heat of formation + Delta-G solvation = 1.461905 kcal Electronic energy + Delta-G solvation = -15421.589805 eV Core-core repulsion = 12969.625381 eV Total energy + Delta-G solvation = -2451.964424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58134 -36.71290 -33.99275 -32.25317 -30.99445 -30.16511 -28.82452 -26.01122 -23.60159 -22.82683 -21.97112 -20.39154 -19.93990 -17.02825 -16.25403 -15.78754 -15.42544 -14.82757 -14.45926 -14.03212 -13.94210 -13.62339 -13.40016 -12.73262 -12.44890 -12.15373 -12.06908 -11.83804 -11.50417 -11.32216 -11.05611 -10.86174 -10.67618 -10.51768 -10.43581 -9.66840 -9.32757 -9.03422 -9.00035 -8.78541 -8.32292 -8.17514 -5.97275 -3.99176 1.25302 1.32385 3.33055 3.40312 3.45043 3.69861 4.35326 4.50431 4.64704 4.85111 4.90438 5.06243 5.31074 5.38601 5.40787 5.45930 5.52985 5.75966 5.82287 5.86981 5.93266 6.00635 6.02327 6.28041 6.35836 6.39115 6.43160 6.52619 6.75137 6.82693 6.92226 7.16752 7.37952 7.65271 7.71776 7.86694 8.03488 8.46880 9.08350 9.64784 11.14251 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.047491 B = 0.003840 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.446897 B = 7289.546975 C = 7539.083258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.120 3.880 3 H 0.049 0.951 4 N -0.684 5.684 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.021 3.979 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.085 4.085 17 C -0.100 4.100 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.116 4.116 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.339 0.661 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -4.587 -20.631 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.067 0.933 4 N -0.316 5.316 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.085 4.085 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.135 4.135 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.157 0.843 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.774 -4.683 -20.327 21.043 hybrid contribution 1.162 0.193 0.627 1.334 sum -1.612 -4.490 -19.700 20.270 Atomic orbital electron populations 1.21764 0.93716 1.02462 1.01206 1.20461 0.96096 0.95243 0.87152 0.93305 1.60705 1.33311 1.33767 1.03792 1.22186 1.00525 0.93698 0.90562 1.21619 0.99279 0.99460 0.94094 1.19073 0.97104 0.94237 0.91200 1.21302 1.43283 0.96439 0.94549 0.92616 1.25037 0.95681 0.94889 0.98981 1.69979 1.49067 1.09018 1.25585 0.86540 0.78472 0.80064 0.82959 1.19718 1.21070 1.21022 1.20068 0.98716 0.94175 0.95538 1.21150 0.98445 0.93999 0.98237 1.21198 0.99375 0.99889 0.93634 1.21138 1.00489 0.94229 0.98571 1.21088 1.00352 0.94657 0.98058 1.21067 0.99281 0.99771 0.93366 0.92935 0.91951 0.92114 0.84251 0.95751 0.91382 0.92540 0.93694 0.96833 0.96570 0.93116 0.84950 0.86149 0.86407 0.86303 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.39 37.15 0.35 -1.27 16 2 C 0.12 1.55 2.82 -68.87 -0.19 1.36 16 3 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 4 N -0.68 -10.16 5.69 -107.95 -0.61 -10.78 16 5 C 0.06 1.03 5.48 -3.82 -0.02 1.01 16 6 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 9 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 10 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 12 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C -0.08 -1.01 4.72 -104.62 -0.49 -1.50 16 17 C -0.10 -1.15 9.00 -39.58 -0.36 -1.51 16 18 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 19 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.26 9.67 -39.58 -0.38 -1.65 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 25 H 0.34 4.92 7.98 -39.29 -0.31 4.60 16 26 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 27 H 0.07 1.21 7.44 -51.93 -0.39 0.83 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 33 H 0.13 1.54 7.71 -52.49 -0.40 1.14 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -30.42 309.42 -9.30 -39.72 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.08 Total: 0.21 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.99 Total: -24.14 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.12 Total: -37.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.42 -9.30 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.180 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds