Wall clock time and date at job start Sun Mar 29 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 120.00071 * 2 1 4 4 C 1.38233 * 119.99612 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00410 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00313 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46661 * 90.00474 * 6 5 4 8 8 C 1.46906 * 110.99888 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46897 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47240 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00243 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46755 * 90.00221 * 15 13 11 17 17 H 1.48494 * 109.47308 * 209.99919 * 15 13 11 18 18 H 1.48496 * 109.47178 * 330.00271 * 15 13 11 19 19 C 1.38237 * 120.00103 * 0.26348 * 5 4 3 20 20 C 1.38237 * 119.99517 * 359.46360 * 19 5 4 21 21 H 1.09000 * 109.46889 * 89.99965 * 1 2 3 22 22 H 1.08995 * 109.47567 * 210.00025 * 1 2 3 23 23 H 1.08995 * 109.46995 * 330.00464 * 1 2 3 24 24 H 1.07993 * 120.00241 * 359.97395 * 3 2 1 25 25 H 1.08006 * 119.99729 * 179.97438 * 4 3 2 26 26 H 1.08995 * 109.47155 * 330.00523 * 6 5 4 27 27 H 1.08997 * 109.47111 * 210.00445 * 6 5 4 28 28 H 1.00902 * 111.00533 * 56.04452 * 7 6 5 29 29 H 1.09000 * 109.47033 * 300.00113 * 8 7 6 30 30 H 1.09001 * 109.46544 * 60.00058 * 8 7 6 31 31 H 1.09000 * 109.47486 * 299.99976 * 9 8 7 32 32 H 1.09001 * 109.47362 * 60.00699 * 9 8 7 33 33 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 34 34 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 35 35 H 0.96992 * 120.00032 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.00627 * 179.72604 * 19 5 4 37 37 H 1.07997 * 120.00192 * 180.27126 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 7 6.2693 0.0003 1.3829 8 6 7.7379 0.0008 1.4211 9 6 8.2102 0.0019 2.8763 10 6 9.7398 0.0031 2.9161 11 6 10.2050 0.0036 4.3494 12 1 9.4821 0.0027 5.1519 13 6 11.5536 0.0041 4.6365 14 7 12.4339 0.0048 3.6593 15 14 12.1303 0.0055 6.4132 16 1 12.2836 -1.3943 6.8848 17 1 13.4362 0.7058 6.5092 18 1 11.1297 0.7057 7.2579 19 6 3.5805 -1.1973 -0.0055 20 6 2.1982 -1.1972 0.0007 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.6583 2.1324 -0.0004 25 1 4.1206 2.1323 -0.0010 26 1 6.1417 0.8895 -0.5161 27 1 6.1416 -0.8904 -0.5155 28 1 5.8942 -0.7809 1.8998 29 1 8.1148 -0.8892 0.9170 30 1 8.1140 0.8908 0.9166 31 1 7.8334 0.8921 3.3800 32 1 7.8341 -0.8879 3.3811 33 1 10.1170 -0.8868 2.4123 34 1 10.1157 0.8931 2.4114 35 1 13.3826 0.0055 3.8613 36 1 4.1204 -2.1326 -0.0100 37 1 1.6581 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042223160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:34 Heat of formation + Delta-G solvation = -21.588519 kcal Electronic energy + Delta-G solvation = -15038.020831 eV Core-core repulsion = 12585.056866 eV Total energy + Delta-G solvation = -2452.963966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36434 -37.77169 -35.67381 -34.16367 -32.52324 -31.78805 -29.36396 -27.48480 -25.08285 -23.75163 -23.54152 -22.07244 -21.43103 -18.50458 -17.34281 -16.77769 -16.56346 -16.10856 -15.98929 -15.60523 -15.15733 -14.50726 -14.42196 -14.25981 -14.14336 -13.53386 -13.26318 -13.20424 -12.86205 -12.73179 -12.62016 -12.47152 -12.26317 -11.90532 -11.79322 -11.53890 -11.39089 -11.10901 -10.55866 -9.80027 -9.53811 -9.28788 -8.20766 -6.31966 0.41051 0.53431 1.39766 1.41436 1.52899 2.40802 2.78528 3.12236 3.42115 3.85955 3.94074 4.11618 4.17889 4.25089 4.25521 4.40776 4.58305 4.66922 4.68819 4.71656 4.86503 4.89539 4.97080 5.00162 5.08788 5.21791 5.23848 5.31410 5.50761 5.52694 5.72930 5.74106 5.74651 5.85115 6.00451 6.16396 6.26417 6.42815 6.84937 7.37335 8.91272 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.057775 B = 0.003299 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.520815 B = 8486.109671 C = 8642.892550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.109 4.109 5 C -0.099 4.099 6 C 0.099 3.901 7 N -0.687 5.687 8 C 0.071 3.929 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.544 4.544 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.120 4.120 20 C -0.129 4.129 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.137 0.863 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.343 0.657 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.050 0.950 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.127 0.873 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.789 -1.000 -8.933 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.127 4.127 5 C -0.099 4.099 6 C -0.029 4.029 7 N -0.319 5.319 8 C -0.057 4.057 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.139 4.139 20 C -0.147 4.147 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.155 0.845 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.161 0.839 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.653 -0.309 -8.910 24.345 hybrid contribution 1.151 -0.863 0.432 1.502 sum -21.503 -1.173 -8.478 23.144 Atomic orbital electron populations 1.20828 0.89375 1.03569 1.03075 1.20299 0.97547 0.93001 0.98850 1.21292 0.93896 0.98603 1.01097 1.21199 0.94695 0.97815 0.99039 1.19834 0.94790 0.93924 1.01367 1.20877 0.90955 1.01422 0.89686 1.60523 1.07590 1.50396 1.13350 1.21864 0.86968 0.99880 0.97029 1.21376 0.95868 1.00680 0.95118 1.18970 0.91882 0.94815 0.95564 1.21707 0.92280 1.50512 0.93722 0.92287 1.26008 0.97099 0.94687 1.02160 1.70098 1.01816 1.51741 1.33814 0.85423 0.77704 0.78555 0.79232 1.19653 1.20620 1.18785 1.21244 0.94929 0.97604 1.00100 1.21272 0.93874 0.98545 1.01040 0.90252 0.90737 0.90843 0.84484 0.85839 0.90394 0.94045 0.83933 0.95615 0.91797 0.93012 0.93150 0.98997 0.98960 0.92726 0.85480 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 4 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 5 C -0.10 -2.33 5.39 -19.86 -0.11 -2.44 16 6 C 0.10 2.51 5.81 85.56 0.50 3.01 16 7 N -0.69 -20.65 6.49 -517.92 -3.36 -24.01 16 8 C 0.07 2.54 5.69 86.30 0.49 3.03 16 9 C -0.09 -3.96 5.41 30.60 0.17 -3.80 16 10 C 0.03 1.38 4.97 29.85 0.15 1.52 16 11 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 15 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 20 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 21 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 23 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 24 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 25 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 26 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 27 H 0.04 1.00 8.08 -2.39 -0.02 0.98 16 28 H 0.34 9.79 8.72 -89.69 -0.78 9.01 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -65.75 313.52 2.54 -63.21 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.24 Total: 12.86 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 3.35 Total: -41.52 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.08 Total: -81.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.75 2.54 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -65.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds