Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.50701 * 109.47307 * 239.99523 * 2 1 3 5 5 C 1.38234 * 119.99671 * 59.72602 * 4 2 1 6 6 C 1.38234 * 120.00115 * 179.74280 * 5 4 2 7 7 C 1.38240 * 119.99724 * 0.53442 * 6 5 4 8 8 C 1.50694 * 120.00203 * 179.77207 * 7 6 5 9 9 N 1.46502 * 109.46773 * 269.97605 * 8 7 6 10 10 C 1.46499 * 120.00545 * 89.99842 * 9 8 7 11 11 C 1.36941 * 120.00029 * 269.99621 * 9 8 7 12 12 H 1.08009 * 119.99458 * 23.04578 * 11 9 8 13 13 C 1.38806 * 120.00528 * 203.04358 * 11 9 8 14 14 N 1.31625 * 119.99807 * 13.05747 * 13 11 9 15 15 Si 1.86796 * 120.00285 * 193.06320 * 13 11 9 16 16 H 1.48498 * 109.47175 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47360 * 119.99977 * 15 13 11 18 18 H 1.48498 * 109.47221 * 239.99842 * 15 13 11 19 19 C 1.38233 * 119.99934 * 359.73956 * 7 6 5 20 20 C 1.38232 * 120.00091 * 240.00167 * 4 2 1 21 21 H 1.08999 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46947 * 300.00412 * 1 2 3 23 23 H 1.09003 * 109.46656 * 60.00296 * 1 2 3 24 24 H 1.09003 * 109.46656 * 119.99704 * 2 1 3 25 25 H 1.09004 * 109.46794 * 299.99834 * 3 2 1 26 26 H 1.08997 * 109.47174 * 59.99643 * 3 2 1 27 27 H 1.08998 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.08007 * 120.00053 * 0.02562 * 5 4 2 29 29 H 1.08002 * 120.00371 * 180.30071 * 6 5 4 30 30 H 1.08996 * 109.47351 * 29.96858 * 8 7 6 31 31 H 1.08991 * 109.47554 * 149.97727 * 8 7 6 32 32 H 1.09002 * 109.47322 * 95.12404 * 10 9 8 33 33 H 1.09000 * 109.47425 * 215.12970 * 10 9 8 34 34 H 1.09001 * 109.46704 * 335.12498 * 10 9 8 35 35 H 0.97003 * 120.00159 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.00316 * 179.97438 * 19 7 6 37 37 H 1.07992 * 120.00064 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2304 5 6 1.6938 -0.2416 -2.4859 6 6 2.1590 -0.8901 -3.6146 7 6 2.9537 -2.0141 -3.4877 8 6 3.4566 -2.7242 -4.7181 9 7 2.4920 -3.7521 -5.1171 10 6 1.4115 -3.4205 -6.0491 11 6 2.6004 -5.0231 -4.6189 12 1 3.1221 -5.1959 -3.6891 13 6 2.0399 -6.0892 -5.3087 14 7 1.6340 -5.9291 -6.5506 15 14 1.8615 -7.7511 -4.4748 16 1 2.3904 -7.6692 -3.0896 17 1 0.4272 -8.1339 -4.4357 18 1 2.6255 -8.7717 -5.2363 19 6 3.2877 -2.4863 -2.2322 20 6 2.8272 -1.8344 -1.1035 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.0696 0.6342 -2.5850 29 1 1.8984 -0.5210 -4.5955 30 1 3.5775 -2.0054 -5.5285 31 1 4.4168 -3.1918 -4.5008 32 1 1.7133 -3.6823 -7.0633 33 1 0.5155 -3.9803 -5.7807 34 1 1.2017 -2.3522 -5.9968 35 1 1.2419 -6.6740 -7.0326 36 1 3.9082 -3.3646 -2.1330 37 1 3.0877 -2.2036 -0.1226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044296897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = 13.840973 kcal Electronic energy + Delta-G solvation = -16177.390552 eV Core-core repulsion = 13725.962924 eV Total energy + Delta-G solvation = -2451.427627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47299 -37.71048 -35.99915 -33.40787 -31.72482 -30.98368 -27.97913 -27.92786 -27.21898 -24.09491 -23.35225 -22.26694 -20.68928 -18.72566 -17.21317 -16.92794 -16.32611 -15.92604 -15.46794 -15.13163 -14.82823 -14.60487 -14.32845 -14.13362 -13.94523 -13.30871 -13.11933 -12.91038 -12.77744 -12.68359 -12.49151 -12.40491 -12.03171 -11.97413 -11.90200 -11.80697 -11.50379 -11.40651 -10.66068 -9.68361 -9.32386 -8.77135 -7.82633 -5.32096 0.58425 0.63665 1.43888 1.45148 1.55618 2.49691 2.96221 3.30522 3.83392 3.88225 3.94062 4.20471 4.25080 4.27558 4.38740 4.55709 4.61008 4.69387 4.81480 4.85650 4.86681 4.96037 5.02751 5.04366 5.15894 5.27720 5.31078 5.34379 5.40593 5.44359 5.60146 5.67839 5.70190 5.83705 5.94946 6.27039 6.32368 7.14389 7.85335 8.29947 9.20332 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.033563 B = 0.006090 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.059547 B = 4596.965435 C = 4901.392695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.090 4.090 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.103 4.103 8 C 0.182 3.818 9 N -0.611 5.611 10 C 0.179 3.821 11 C -0.256 4.256 12 H 0.067 0.933 13 C -0.054 4.054 14 N -0.940 5.940 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.289 1.289 19 C -0.120 4.120 20 C -0.128 4.128 21 H 0.042 0.958 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.136 0.864 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.029 0.971 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 13.800 12.369 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.141 4.141 7 C -0.106 4.106 8 C 0.056 3.944 9 N -0.333 5.333 10 C 0.034 3.966 11 C -0.386 4.386 12 H 0.085 0.915 13 C -0.249 4.249 14 N -0.587 5.587 15 Si 0.794 3.206 16 H -0.192 1.192 17 H -0.219 1.219 18 H -0.216 1.216 19 C -0.138 4.138 20 C -0.145 4.145 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.076 13.684 12.240 18.359 hybrid contribution -0.163 -1.386 -0.192 1.409 sum -0.240 12.298 12.048 17.217 Atomic orbital electron populations 1.21848 0.94034 1.01499 1.02570 1.20135 0.96155 0.96502 0.94312 1.21821 1.00911 0.94324 1.02554 1.20065 0.97698 0.95803 0.95454 1.21089 1.00313 1.00481 0.91706 1.21134 0.98026 0.95776 0.99128 1.20888 0.98186 0.95145 0.96379 1.19855 0.91710 0.90225 0.92570 1.44091 1.29935 1.06657 1.52637 1.20516 0.89691 0.94054 0.92307 1.19493 1.32546 0.84165 1.02373 0.91484 1.25757 1.02136 1.01080 0.95887 1.70240 1.47042 1.31400 1.10007 0.85216 0.77019 0.80049 0.78279 1.19209 1.21866 1.21624 1.21084 1.00844 0.99262 0.92657 1.21219 0.98856 0.96116 0.98359 0.93877 0.90695 0.92525 0.90122 0.92451 0.90888 0.93009 0.84643 0.86254 0.92489 0.93170 0.97410 0.97091 0.95239 0.94307 0.87384 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.00 71.98 0.65 -2.02 16 2 C -0.05 -1.05 3.09 -11.54 -0.04 -1.09 16 3 C -0.14 -2.29 9.01 71.98 0.65 -1.65 16 4 C -0.09 -2.43 4.78 -19.87 -0.09 -2.53 16 5 C -0.12 -3.34 8.71 22.27 0.19 -3.15 16 6 C -0.12 -4.08 9.70 22.27 0.22 -3.86 16 7 C -0.10 -3.93 5.46 -19.87 -0.11 -4.04 16 8 C 0.18 7.79 5.77 85.63 0.49 8.28 16 9 N -0.61 -31.83 2.90 -731.33 -2.12 -33.95 16 10 C 0.18 9.23 8.98 127.77 1.15 10.38 16 11 C -0.26 -14.46 9.65 84.03 0.81 -13.65 16 12 H 0.07 3.71 7.86 -2.91 -0.02 3.69 16 13 C -0.05 -3.11 5.10 84.86 0.43 -2.68 16 14 N -0.94 -57.04 10.72 21.65 0.23 -56.81 16 15 Si 0.97 46.29 29.57 68.60 2.03 48.32 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 C -0.12 -4.31 9.70 22.27 0.22 -4.10 16 20 C -0.13 -3.85 9.67 22.27 0.22 -3.64 16 21 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.05 7.37 -2.39 -0.02 1.04 16 24 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 25 H 0.06 0.94 7.40 -2.39 -0.02 0.92 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.14 3.12 7.10 -2.91 -0.02 3.10 16 29 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.06 2.25 8.02 -2.39 -0.02 2.23 16 31 H 0.05 2.15 7.98 -2.39 -0.02 2.13 16 32 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16 33 H 0.01 0.59 7.35 -2.39 -0.02 0.57 16 34 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.13 3.34 7.95 -2.91 -0.02 3.32 16 Total: -1.00 -64.56 304.43 5.93 -58.63 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.01 Total: 7.55 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.78 Total: -23.74 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.89 Total: -90.76 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -64.56 5.93 -58.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.472 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds