Wall clock time and date at job start Sun Mar 29 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38310 * 119.96414 * 2 1 4 4 C 1.38264 * 120.15272 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07351 * 0.30282 * 4 3 2 6 6 C 1.38898 * 119.91986 * 359.44369 * 5 4 3 7 7 N 1.39675 * 120.07050 * 180.27821 * 6 5 4 8 8 C 1.46502 * 119.99927 * 180.25384 * 7 6 5 9 9 C 1.46500 * 120.00199 * 0.25619 * 7 6 5 10 10 C 1.52999 * 109.47618 * 89.99723 * 9 7 6 11 11 C 1.53001 * 109.47480 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46999 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00231 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99777 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00248 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99958 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47295 * 89.99828 * 16 14 12 18 18 H 1.48497 * 109.47287 * 209.99705 * 16 14 12 19 19 H 1.48497 * 109.47351 * 330.00044 * 16 14 12 20 20 C 1.38077 * 119.96408 * 180.02562 * 2 1 3 21 21 H 1.08991 * 109.47368 * 89.99646 * 1 2 3 22 22 H 1.08996 * 109.46978 * 210.00326 * 1 2 3 23 23 H 1.09006 * 109.47170 * 329.99711 * 1 2 3 24 24 H 1.08005 * 119.92485 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.96124 * 180.02562 * 4 3 2 26 26 H 1.07998 * 120.04085 * 179.72215 * 5 4 3 27 27 H 1.08990 * 109.47019 * 89.99781 * 8 7 6 28 28 H 1.09002 * 109.47076 * 210.00038 * 8 7 6 29 29 H 1.09003 * 109.46773 * 329.99727 * 8 7 6 30 30 H 1.09003 * 109.47022 * 210.00377 * 9 7 6 31 31 H 1.09003 * 109.47169 * 329.99486 * 9 7 6 32 32 H 1.08998 * 109.47017 * 300.00225 * 10 9 7 33 33 H 1.08998 * 109.46607 * 59.99842 * 10 9 7 34 34 H 1.09008 * 109.46558 * 300.00283 * 11 10 9 35 35 H 1.08996 * 109.46762 * 59.99617 * 11 10 9 36 36 H 0.96996 * 120.00023 * 180.02562 * 15 14 12 37 37 H 1.08007 * 120.03540 * 359.95962 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 -0.0052 6 6 3.5859 -1.1953 0.0001 7 7 4.2867 -2.4036 0.0001 8 6 3.5566 -3.6738 0.0001 9 6 5.7516 -2.4007 0.0002 10 6 6.2617 -2.3997 1.4427 11 6 7.7917 -2.3961 1.4428 12 6 8.2939 -2.3957 2.8636 13 1 7.5921 -2.3982 3.6844 14 6 9.6495 -2.3931 3.1155 15 7 10.0879 -2.3933 4.3555 16 14 10.8633 -2.3895 1.6957 17 1 11.1822 -0.9884 1.3206 18 1 12.1080 -3.0873 2.1068 19 1 10.2649 -3.0897 0.5310 20 6 2.1966 -1.1962 -0.0005 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6559 2.1325 0.0004 25 1 4.1167 2.1402 0.0010 26 1 5.3565 0.0139 -0.0094 27 1 3.3756 -3.9887 -1.0274 28 1 4.1472 -4.4323 0.5140 29 1 2.6040 -3.5452 0.5140 30 1 6.1167 -3.2900 -0.5137 31 1 6.1133 -1.5101 -0.5137 32 1 5.8966 -1.5104 1.9565 33 1 5.9000 -3.2903 1.9565 34 1 8.1571 -3.2852 0.9288 35 1 8.1529 -1.5052 0.9290 36 1 11.0415 -2.3911 4.5327 37 1 1.6566 -2.1316 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049986572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:58 Heat of formation + Delta-G solvation = 14.954861 kcal Electronic energy + Delta-G solvation = -15811.301637 eV Core-core repulsion = 13359.922312 eV Total energy + Delta-G solvation = -2451.379326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53955 -36.67529 -33.79572 -32.41168 -31.79627 -29.64216 -28.21540 -26.53536 -25.29635 -22.94611 -21.55725 -20.35956 -19.73380 -17.18354 -16.70460 -15.64847 -15.32661 -14.46869 -14.30293 -14.21362 -13.85159 -13.61491 -13.48467 -12.89483 -12.68524 -12.18591 -12.18052 -11.90592 -11.85781 -11.54811 -11.30263 -11.06027 -10.81475 -10.61588 -10.00689 -9.94933 -9.73666 -9.39041 -9.18262 -8.54504 -8.53438 -7.01946 -6.04236 -4.02434 1.61143 1.82498 3.30029 3.36224 3.37720 3.40288 4.05893 4.44579 4.91067 5.01962 5.12607 5.29255 5.34904 5.39216 5.46959 5.52113 5.55487 5.61275 5.70296 5.78834 5.82506 5.91051 6.01965 6.04353 6.18501 6.43234 6.46647 6.62887 6.73243 6.84766 6.87032 7.08842 7.28766 7.38952 7.52898 7.75357 7.79854 8.54618 9.01039 9.57919 11.09365 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.037245 B = 0.005013 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.592892 B = 5583.985512 C = 5845.804273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.189 4.189 4 C -0.069 4.069 5 C -0.200 4.200 6 C 0.227 3.773 7 N -0.630 5.630 8 C 0.094 3.906 9 C 0.118 3.882 10 C -0.119 4.119 11 C -0.012 4.012 12 C -0.519 4.519 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.206 4.206 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.264 2.593 -11.503 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.209 4.209 4 C -0.087 4.087 5 C -0.222 4.222 6 C 0.124 3.876 7 N -0.339 5.339 8 C -0.049 4.049 9 C -0.005 4.005 10 C -0.157 4.157 11 C -0.050 4.050 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.229 4.229 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.996 2.386 -11.402 19.788 hybrid contribution 0.870 -0.042 -0.501 1.005 sum -15.126 2.344 -11.903 19.390 Atomic orbital electron populations 1.20764 0.91780 1.02407 1.01906 1.19573 0.95290 0.92757 0.97024 1.20691 0.94134 0.96948 1.09159 1.20859 0.94013 0.97240 0.96637 1.20803 1.00165 0.91116 1.10127 1.17858 0.90964 0.86093 0.92688 1.46653 1.05394 1.02697 1.79124 1.21586 0.97130 0.85671 1.00552 1.21738 0.77787 1.02053 0.98893 1.21875 0.98156 1.01659 0.94041 1.19526 0.91230 0.96164 0.98054 1.21125 0.92544 1.50698 0.91364 0.91136 1.25043 0.98442 0.94592 0.95463 1.69919 1.14399 1.51211 1.18786 0.86768 0.80694 0.78517 0.83227 1.20267 1.21401 1.19045 1.20475 0.92046 0.97845 1.12503 0.91479 0.91876 0.91736 0.86974 0.86413 0.85697 0.93838 0.91330 0.91746 0.91282 0.91063 0.92446 0.92743 0.96667 0.97040 0.92748 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.05 -0.58 5.88 -104.66 -0.62 -1.19 16 3 C -0.19 -2.42 9.70 -39.55 -0.38 -2.80 16 4 C -0.07 -0.94 10.04 -39.61 -0.40 -1.34 16 5 C -0.20 -3.08 9.21 -39.38 -0.36 -3.44 16 6 C 0.23 3.47 6.55 -83.79 -0.55 2.92 16 7 N -0.63 -9.43 3.01 -179.62 -0.54 -9.97 16 8 C 0.09 1.13 10.19 59.85 0.61 1.74 16 9 C 0.12 1.91 5.17 -4.04 -0.02 1.89 16 10 C -0.12 -2.37 5.48 -26.73 -0.15 -2.52 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 12 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 16 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.21 -2.81 8.86 -39.39 -0.35 -3.16 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 23 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 24 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 25 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.13 1.96 6.14 -52.49 -0.32 1.64 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.06 0.70 6.20 -51.93 -0.32 0.38 16 30 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.07 1.13 6.19 -51.93 -0.32 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.35 7.20 -51.92 -0.37 -0.02 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.12 1.40 6.14 -52.48 -0.32 1.08 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -31.45 302.16 -8.13 -39.58 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.86 Total: -1.38 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.40 Total: -22.47 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.23 Total: -37.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.45 -8.13 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049986572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.537 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds