Wall clock time and date at job start Sun Mar 29 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38235 * 119.99836 * 2 1 4 4 C 1.38233 * 120.00097 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99876 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99885 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46949 * 345.85230 * 6 5 4 8 8 C 1.52994 * 109.47179 * 105.85534 * 6 5 4 9 9 N 1.46903 * 109.47090 * 225.85575 * 6 5 4 10 10 C 1.46898 * 111.00215 * 185.07798 * 9 6 5 11 11 C 1.46900 * 110.99984 * 61.12306 * 9 6 5 12 12 C 1.50698 * 109.47068 * 190.00264 * 11 9 6 13 13 H 1.08000 * 120.00258 * 359.97438 * 12 11 9 14 14 C 1.37884 * 119.99982 * 180.02562 * 12 11 9 15 15 N 1.31509 * 119.99848 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47305 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47140 * 119.99985 * 16 14 12 19 19 H 1.48502 * 109.47195 * 239.99912 * 16 14 12 20 20 C 1.38234 * 119.99843 * 0.27587 * 5 4 3 21 21 C 1.38228 * 120.00258 * 359.51606 * 20 5 4 22 22 H 1.09005 * 109.47532 * 90.00132 * 1 2 3 23 23 H 1.09003 * 109.47061 * 209.99299 * 1 2 3 24 24 H 1.08996 * 109.47648 * 329.99897 * 1 2 3 25 25 H 1.08002 * 119.99962 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.00297 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47121 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.47234 * 299.99752 * 8 6 5 29 29 H 1.09000 * 109.47428 * 59.99989 * 8 6 5 30 30 H 1.09009 * 109.46943 * 66.46528 * 10 9 6 31 31 H 1.09001 * 109.47370 * 186.46329 * 10 9 6 32 32 H 1.09000 * 109.47287 * 306.46790 * 10 9 6 33 33 H 1.08999 * 109.47585 * 310.00339 * 11 9 6 34 34 H 1.08996 * 109.47083 * 70.00426 * 11 9 6 35 35 H 0.96998 * 119.99820 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.99714 * 179.72859 * 20 5 4 37 37 H 1.08004 * 120.00473 * 180.27463 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0001 0.0016 6 6 5.7786 0.0002 0.0028 7 1 6.1421 0.9966 -0.2486 8 6 6.2876 -0.3933 1.3909 9 7 6.2691 -0.9649 -0.9903 10 6 7.7325 -1.0805 -0.9340 11 6 5.8212 -0.6032 -2.3418 12 6 6.1284 -1.7320 -3.2917 13 1 6.6088 -2.6283 -2.9280 14 6 5.7972 -1.6201 -4.6255 15 7 5.2136 -0.5281 -5.0687 16 14 6.1787 -3.0190 -5.8031 17 1 6.8327 -4.1266 -5.0608 18 1 4.9172 -3.5101 -6.4136 19 1 7.0890 -2.5329 -6.8710 20 6 3.5805 -1.1970 -0.0036 21 6 2.1982 -1.1971 0.0002 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6580 2.1325 -0.0004 26 1 4.1204 2.1326 0.0010 27 1 7.3776 -0.3937 1.3916 28 1 5.9237 0.3228 2.1278 29 1 5.9241 -1.3897 1.6423 30 1 8.0255 -1.5253 0.0171 31 1 8.0788 -1.7117 -1.7523 32 1 8.1789 -0.0903 -1.0249 33 1 4.7469 -0.4192 -2.3315 34 1 6.3409 0.2977 -2.6678 35 1 4.9803 -0.4496 -6.0069 36 1 4.1205 -2.1323 -0.0072 37 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051382929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:54 Heat of formation + Delta-G solvation = 18.274383 kcal Electronic energy + Delta-G solvation = -16448.905829 eV Core-core repulsion = 13997.670449 eV Total energy + Delta-G solvation = -2451.235380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24669 -36.79956 -33.12735 -32.14119 -30.40600 -29.98617 -27.34793 -26.10767 -24.83952 -22.33956 -22.03576 -20.84037 -19.16166 -16.38431 -15.80913 -15.36270 -14.77062 -14.48129 -14.10468 -13.56046 -13.49389 -13.32451 -12.89308 -12.73497 -12.04248 -11.94330 -11.82003 -11.70497 -11.53114 -11.21049 -11.02390 -10.80316 -10.57931 -10.42152 -10.39300 -10.17657 -9.77096 -9.12726 -8.41691 -8.37255 -7.93922 -7.20809 -5.97838 -3.98690 1.83432 1.95070 3.32683 3.40002 3.44641 4.24562 4.45694 4.95569 5.17378 5.24620 5.34828 5.37721 5.49753 5.63145 5.75241 5.77661 5.81395 5.96333 6.01035 6.06322 6.18432 6.19961 6.28611 6.34188 6.52043 6.55800 6.63432 6.78843 6.91785 7.05379 7.20282 7.40464 7.43494 7.54154 7.85087 8.16269 8.26084 8.60328 9.09157 9.64756 11.13015 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.008259 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.190907 B = 3389.242126 C = 4255.262219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.064 4.064 6 C 0.116 3.884 7 H 0.035 0.965 8 C -0.139 4.139 9 N -0.533 5.533 10 C 0.035 3.965 11 C 0.192 3.808 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.076 4.076 21 C -0.126 4.126 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.009 0.991 33 H 0.036 0.964 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 1.751 11.632 12.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.064 4.064 6 C 0.007 3.993 7 H 0.053 0.947 8 C -0.196 4.196 9 N -0.258 5.258 10 C -0.114 4.114 11 C 0.067 3.933 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.094 4.094 21 C -0.144 4.144 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.410 1.370 11.580 12.467 hybrid contribution 0.513 0.209 -1.173 1.297 sum -3.897 1.579 10.408 11.225 Atomic orbital electron populations 1.20729 0.91915 1.01956 1.01993 1.19794 0.95525 0.93437 1.01124 1.20815 0.94011 0.97062 1.02560 1.20951 0.94116 0.97402 1.00906 1.19738 0.95014 0.93066 0.98616 1.20512 0.90716 0.94689 0.93413 0.94719 1.21865 1.00652 1.01710 0.95384 1.62209 1.09781 1.46302 1.07518 1.22265 0.88720 0.99193 1.01213 1.19744 0.96284 0.95072 0.82185 1.21197 1.38717 1.02179 0.92244 0.91895 1.24985 0.95463 0.95876 0.98317 1.69979 1.41942 1.26665 1.15062 0.86488 0.77949 0.82375 0.80887 1.19683 1.21076 1.21176 1.21004 0.93299 0.98485 0.96599 1.20987 0.94451 0.97054 1.01908 0.91510 0.92010 0.92136 0.86848 0.86838 0.92527 0.93056 0.91946 0.93295 0.90525 0.97286 0.94562 0.99588 0.93096 0.85282 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.00 0.36 -0.95 16 2 C -0.10 -1.54 5.88 -104.63 -0.62 -2.16 16 3 C -0.13 -2.00 9.70 -39.58 -0.38 -2.39 16 4 C -0.12 -1.99 9.67 -39.58 -0.38 -2.37 16 5 C -0.06 -1.19 3.48 -104.62 -0.36 -1.56 16 6 C 0.12 2.15 2.26 -68.87 -0.16 2.00 16 7 H 0.03 0.67 7.94 -51.93 -0.41 0.26 16 8 C -0.14 -2.09 8.73 37.15 0.32 -1.76 16 9 N -0.53 -11.61 4.10 -237.73 -0.97 -12.59 16 10 C 0.03 0.68 8.76 60.06 0.53 1.20 16 11 C 0.19 5.12 4.50 -4.98 -0.02 5.09 16 12 C -0.50 -14.36 8.36 -34.44 -0.29 -14.65 16 13 H 0.06 1.77 7.18 -52.49 -0.38 1.39 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.08 -1.40 8.87 -39.59 -0.35 -1.75 16 21 C -0.13 -2.10 9.70 -39.59 -0.38 -2.49 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.11 1.77 8.00 -52.48 -0.42 1.35 16 27 H 0.06 0.80 6.48 -51.93 -0.34 0.46 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.05 0.81 6.62 -51.92 -0.34 0.47 16 31 H 0.08 1.62 6.64 -51.93 -0.34 1.28 16 32 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 33 H 0.04 1.05 6.59 -51.93 -0.34 0.71 16 34 H -0.01 -0.40 8.12 -51.93 -0.42 -0.82 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 2.45 7.89 -52.49 -0.41 2.04 16 37 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.71 302.17 -8.46 -39.17 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.92 Total: -1.29 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.83 Total: -20.31 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.24 Total: -39.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.71 -8.46 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051382929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.443 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds