Wall clock time and date at job start Sun Mar 29 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 S 1.81407 * 109.47273 * 179.97438 * 11 10 9 13 13 N 1.65602 * 104.45007 * 180.02562 * 12 11 10 14 14 O 1.42097 * 110.54082 * 291.62670 * 12 11 10 15 15 O 1.42096 * 110.53781 * 68.37439 * 12 11 10 16 16 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 17 17 C 1.53010 * 117.49191 * 3.28927 * 16 9 7 18 18 C 1.53003 * 59.99957 * 252.51124 * 17 16 9 19 19 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 20 20 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 21 21 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 22 22 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 23 23 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 24 24 H 0.97000 * 120.00022 * 150.00398 * 13 12 11 25 25 H 0.97001 * 120.00001 * 330.00006 * 13 12 11 26 26 H 1.08995 * 115.55377 * 148.99346 * 16 9 7 27 27 H 1.08990 * 117.50193 * 0.02562 * 17 16 9 28 28 H 1.09008 * 117.49268 * 145.02347 * 17 16 9 29 29 H 1.09004 * 117.49896 * 252.51715 * 18 17 16 30 30 H 1.08992 * 117.51607 * 107.48005 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 16 0.0979 -2.5756 4.2370 13 7 1.0566 -2.8843 5.5515 14 8 -0.3860 -1.2581 4.4585 15 8 -0.7907 -3.6830 4.1827 16 6 1.6396 -3.6090 -0.3118 17 6 2.6701 -3.5847 -1.4426 18 6 1.1797 -3.7016 -1.7682 19 1 -0.4850 0.8368 0.0731 20 1 -0.0097 -1.3500 1.6009 21 1 -0.3004 -3.0948 1.4021 22 1 1.7131 -3.5853 2.7638 23 1 2.0036 -1.8405 2.9626 24 1 0.8248 -2.5156 6.4182 25 1 1.8500 -3.4340 5.4547 26 1 1.5779 -4.5130 0.2940 27 1 3.1595 -2.6348 -1.6573 28 1 3.2866 -4.4730 -1.5807 29 1 0.8157 -4.6668 -2.1205 30 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077272012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:52 Heat of formation + Delta-G solvation = -56.583418 kcal Electronic energy + Delta-G solvation = -15173.815202 eV Core-core repulsion = 12517.685595 eV Total energy + Delta-G solvation = -2656.129607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.85892 -37.98907 -36.91070 -35.65477 -33.97278 -33.51187 -30.65370 -26.62716 -24.00911 -22.93829 -21.60345 -20.30589 -18.69919 -18.31881 -17.88156 -17.30458 -16.99431 -16.47150 -15.96791 -15.75463 -14.61552 -14.57494 -14.05380 -13.52189 -13.12771 -13.09811 -13.00412 -12.97770 -12.72798 -12.60916 -12.18531 -12.04424 -11.76225 -11.60963 -11.38467 -11.15791 -10.88290 -10.53699 -8.58585 -7.87074 -5.58301 -0.59583 1.44868 1.47599 1.54049 2.11739 2.45664 2.78914 3.12988 3.35556 3.50596 3.53351 4.03224 4.16853 4.31603 4.49898 4.54803 4.66653 4.95328 4.99980 5.10974 5.32231 5.35315 5.49428 5.55610 5.67913 6.40895 6.46025 7.07019 7.73633 8.27074 9.04854 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.010330 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.558325 B = 2709.878130 C = 3559.784637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.035 4.035 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.557 5.557 10 C 0.150 3.850 11 C -0.611 4.611 12 S 2.630 3.370 13 N -1.234 6.234 14 O -1.011 7.011 15 O -1.005 7.005 16 C 0.095 3.905 17 C -0.175 4.175 18 C -0.222 4.222 19 H 0.254 0.746 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.151 0.849 23 H 0.135 0.865 24 H 0.424 0.576 25 H 0.427 0.573 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 -7.604 7.471 12.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.274 5.274 10 C 0.021 3.979 11 C -0.746 4.746 12 S 2.723 3.277 13 N -0.911 5.911 14 O -1.001 7.001 15 O -0.994 6.994 16 C -0.013 4.013 17 C -0.213 4.213 18 C -0.263 4.263 19 H 0.063 0.937 20 H 0.089 0.911 21 H 0.066 0.934 22 H 0.169 0.831 23 H 0.153 0.847 24 H 0.256 0.744 25 H 0.257 0.743 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.844 -7.263 7.303 11.382 hybrid contribution 0.884 1.058 -0.176 1.390 sum 5.728 -6.205 7.127 11.050 Atomic orbital electron populations 1.70127 1.06999 1.27033 1.51626 1.26004 0.95635 1.01948 0.99728 0.85589 0.78057 0.79617 0.78794 1.19825 1.22239 1.19606 1.19225 0.93618 0.85869 1.40995 0.91418 1.43413 1.50510 1.04098 1.29428 1.20522 0.91143 1.02016 0.84199 1.30919 1.16532 1.12471 1.14630 1.04033 0.75143 0.72755 0.75737 1.52794 1.44168 1.68845 1.25310 1.93524 1.80161 1.41447 1.84968 1.93529 1.63546 1.55335 1.86958 1.21666 1.02294 0.90164 0.87162 1.23042 0.91764 1.02535 1.04005 1.23279 0.97768 1.01071 1.04171 0.93690 0.91054 0.93418 0.83050 0.84666 0.74446 0.74315 0.86210 0.90586 0.86747 0.87951 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 11.50 21.65 0.25 -52.91 16 2 C -0.03 -1.88 4.98 84.86 0.42 -1.46 16 3 Si 0.95 43.42 29.60 68.60 2.03 45.45 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.27 -13.74 8.47 84.03 0.71 -13.03 16 8 H 0.07 3.42 6.75 -2.91 -0.02 3.40 16 9 N -0.56 -26.03 2.75 -678.02 -1.86 -27.90 16 10 C 0.15 6.64 5.34 86.38 0.46 7.10 16 11 C -0.61 -19.54 6.50 71.98 0.47 -19.07 16 12 S 2.63 80.92 5.97 -56.49 -0.34 80.58 16 13 N -1.23 -23.50 9.36 37.02 0.35 -23.15 16 14 O -1.01 -40.66 18.10 -127.65 -2.31 -42.97 16 15 O -1.00 -36.73 18.10 -127.65 -2.31 -39.04 16 16 C 0.09 3.71 6.56 45.00 0.30 4.01 16 17 C -0.18 -6.24 9.80 30.60 0.30 -5.94 16 18 C -0.22 -8.59 10.36 30.60 0.32 -8.27 16 19 H 0.25 14.45 8.32 -92.71 -0.77 13.68 16 20 H 0.07 3.73 5.59 -2.39 -0.01 3.72 16 21 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 22 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16 23 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 24 H 0.42 6.88 8.96 -96.74 -0.87 6.01 16 25 H 0.43 5.21 8.96 -96.74 -0.87 4.34 16 26 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.08 3.05 6.46 -2.39 -0.02 3.04 16 28 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 29 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 30 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -73.39 270.68 -1.79 -75.18 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.57 Total: 21.42 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 2.98 Total: -36.66 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -1.27 Total: -103.96 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -4.62 Total: -82.01 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 80.92 SS G_CDS: -0.34 Total: 80.58 kcal Total: -73.39 -1.79 -75.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077272012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.598 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds