Wall clock time and date at job start Sun Mar 29 2020 21:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50708 * 109.47384 * 2 1 4 4 C 1.38262 * 119.99673 * 265.00255 * 3 2 1 5 5 C 1.38207 * 119.99568 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00357 * 359.95719 * 5 4 3 7 7 C 1.38220 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.38204 * 119.99830 * 85.02132 * 3 2 1 9 9 C 1.50701 * 120.00225 * 359.97438 * 8 3 2 10 10 N 1.46891 * 109.47206 * 80.00005 * 9 8 3 11 11 C 1.46900 * 111.00025 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47409 * 324.99816 * 11 10 9 13 13 C 1.53006 * 109.47330 * 85.00129 * 11 10 9 14 14 C 1.50700 * 109.47185 * 204.99811 * 11 10 9 15 15 H 1.08004 * 120.00004 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00299 * 179.97438 * 14 11 10 17 17 N 1.31523 * 119.99629 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00412 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46978 * 89.99764 * 18 16 14 20 20 H 1.48498 * 109.47432 * 209.99963 * 18 16 14 21 21 H 1.48506 * 109.47326 * 330.00368 * 18 16 14 22 22 H 1.09007 * 109.46941 * 300.00144 * 1 2 3 23 23 H 1.08993 * 109.47435 * 59.99665 * 1 2 3 24 24 H 1.08993 * 109.47390 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47163 * 239.99847 * 2 1 3 26 26 H 1.08998 * 109.47392 * 119.99859 * 2 1 3 27 27 H 1.07991 * 120.00010 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.00334 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.00604 * 179.72567 * 6 5 4 30 30 H 1.08002 * 119.99604 * 180.02562 * 7 6 5 31 31 H 1.09009 * 109.47012 * 200.00023 * 9 8 3 32 32 H 1.08997 * 109.46940 * 319.99738 * 9 8 3 33 33 H 1.00899 * 111.00053 * 303.95346 * 10 9 8 34 34 H 1.09001 * 109.46313 * 299.99724 * 13 11 10 35 35 H 1.08998 * 109.47130 * 59.99516 * 13 11 10 36 36 H 1.09000 * 109.47362 * 180.02562 * 13 11 10 37 37 H 0.96995 * 119.99522 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0378 -1.1929 5 6 2.8224 3.3406 -1.1928 6 6 2.9542 4.0273 -0.0001 7 6 2.6241 3.4110 1.1922 8 6 2.1648 2.1070 1.1924 9 6 1.8062 1.4345 2.4925 10 7 2.9109 0.5628 2.9138 11 6 2.5958 -0.1114 4.1804 12 1 2.0105 0.5568 4.8120 13 6 1.7898 -1.3805 3.8960 14 6 3.8758 -0.4771 4.8868 15 1 4.8281 -0.2335 4.4394 16 6 3.8312 -1.1228 6.1043 17 7 2.6715 -1.4199 6.6489 18 14 5.4177 -1.5767 6.9795 19 1 5.8303 -0.4600 7.8671 20 1 5.2021 -2.8010 7.7919 21 1 6.4821 -1.8300 5.9753 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2583 1.5014 -2.1245 28 1 3.0796 3.8225 -2.1245 29 1 3.3188 5.0439 0.0004 30 1 2.7267 3.9475 2.1239 31 1 1.6292 2.1917 3.2565 32 1 0.9042 0.8380 2.3564 33 1 3.1372 -0.1075 2.1944 34 1 0.8640 -1.1159 3.3851 35 1 2.3752 -2.0487 3.2644 36 1 1.5557 -1.8805 4.8358 37 1 2.6401 -1.8738 7.5055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082774702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:25 Heat of formation + Delta-G solvation = 8.991716 kcal Electronic energy + Delta-G solvation = -16280.919091 eV Core-core repulsion = 13829.281184 eV Total energy + Delta-G solvation = -2451.637907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48523 -35.99722 -33.97197 -32.72584 -30.98403 -29.30403 -27.90993 -25.18915 -24.54698 -23.38622 -21.48800 -20.18125 -20.15948 -16.55843 -15.93558 -15.65572 -15.00742 -14.64556 -14.18683 -13.63971 -13.44502 -13.27051 -13.01844 -12.66562 -12.44541 -11.87970 -11.75641 -11.51099 -11.46841 -11.08737 -10.95640 -10.80911 -10.71097 -10.46426 -10.33422 -10.10234 -9.81851 -8.99768 -8.56644 -8.35854 -8.34057 -7.18837 -5.96741 -3.99808 1.59051 1.64402 3.34391 3.40338 3.44960 3.98153 4.46716 4.92600 5.01105 5.17662 5.22655 5.29262 5.34803 5.47851 5.58557 5.63219 5.73653 5.77063 5.95560 6.03757 6.12769 6.17042 6.27024 6.38359 6.45907 6.69617 6.70268 6.76024 6.84615 7.00860 7.10480 7.25566 7.38040 7.74907 7.90502 8.28708 8.55646 8.63194 9.07634 9.65499 11.10261 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.006088 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.729323 B = 4597.896477 C = 5075.061102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.077 4.077 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.128 4.128 7 C -0.102 4.102 8 C -0.062 4.062 9 C 0.092 3.908 10 N -0.676 5.676 11 C 0.210 3.790 12 H 0.034 0.966 13 C -0.169 4.169 14 C -0.494 4.494 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.325 0.675 34 H 0.005 0.995 35 H 0.027 0.973 36 H 0.089 0.911 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 5.880 -13.556 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.078 4.078 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.146 4.146 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.038 4.038 10 N -0.307 5.307 11 C 0.103 3.897 12 H 0.051 0.949 13 C -0.228 4.228 14 C -0.533 4.533 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.143 0.857 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.108 0.892 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.121 6.292 -13.062 14.830 hybrid contribution 0.190 -0.898 0.237 0.948 sum -2.931 5.394 -12.825 14.219 Atomic orbital electron populations 1.21733 0.94930 1.01617 1.01922 1.20615 0.96147 0.92983 1.03067 1.19769 0.99197 0.96037 0.92759 1.20930 1.00649 0.95211 0.97182 1.21005 1.01017 0.94935 0.97769 1.21072 1.01083 0.99753 0.92714 1.21068 0.98327 0.94723 0.97941 1.19927 0.97652 0.94025 0.94668 1.20943 0.93781 0.96672 0.92355 1.60931 1.37497 1.25658 1.06624 1.19205 0.95303 0.89901 0.85319 0.94857 1.22436 0.96670 1.01453 1.02258 1.21165 0.92714 1.36009 1.03376 0.91956 1.24949 0.96247 0.96028 0.97327 1.69887 1.23719 1.42266 1.17939 0.86505 0.83647 0.77737 0.79532 1.20776 1.21434 1.19951 0.92345 0.92929 0.92497 0.91352 0.90394 0.86659 0.86717 0.86569 0.86052 0.91116 0.94904 0.85725 0.97564 0.95381 0.89236 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.75 37.15 0.36 -1.43 16 2 C -0.09 -1.24 5.39 -27.88 -0.15 -1.39 16 3 C -0.08 -1.14 5.13 -104.62 -0.54 -1.67 16 4 C -0.12 -1.59 9.68 -39.58 -0.38 -1.98 16 5 C -0.13 -1.61 10.05 -39.59 -0.40 -2.00 16 6 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 7 C -0.10 -1.54 9.67 -39.58 -0.38 -1.93 16 8 C -0.06 -1.01 5.39 -104.63 -0.56 -1.58 16 9 C 0.09 1.69 4.87 -4.98 -0.02 1.66 16 10 N -0.68 -14.60 6.21 -109.22 -0.68 -15.28 16 11 C 0.21 5.30 2.57 -68.86 -0.18 5.12 16 12 H 0.03 0.92 7.80 -51.93 -0.41 0.52 16 13 C -0.17 -4.04 8.94 37.16 0.33 -3.71 16 14 C -0.49 -13.80 8.84 -34.44 -0.30 -14.10 16 15 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.05 1.53 5.30 -17.81 -0.09 1.44 16 17 N -0.90 -25.77 11.32 55.43 0.63 -25.15 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 H 0.06 0.78 6.72 -51.92 -0.35 0.43 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.08 1.21 5.43 -51.93 -0.28 0.93 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 31 H 0.07 1.33 7.92 -51.92 -0.41 0.92 16 32 H 0.03 0.60 5.14 -51.93 -0.27 0.33 16 33 H 0.32 6.76 6.62 -39.29 -0.26 6.50 16 34 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 35 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 297.96 15.07 4.49 4.49 Total: -1.00 -28.81 297.96 -8.90 -37.71 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.60 Total: 5.21 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.72 Total: -23.64 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.05 Total: -40.43 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.81 -8.90 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.699 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds