Wall clock time and date at job start Sun Mar 29 2020 21:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50708 * 109.47384 * 2 1 4 4 C 1.38262 * 119.99673 * 265.00255 * 3 2 1 5 5 C 1.38207 * 119.99568 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00357 * 359.95719 * 5 4 3 7 7 C 1.38220 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.38204 * 119.99830 * 85.02132 * 3 2 1 9 9 C 1.50701 * 120.00225 * 359.97438 * 8 3 2 10 10 N 1.46891 * 109.47206 * 80.00005 * 9 8 3 11 11 C 1.46900 * 111.00025 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47409 * 324.99816 * 11 10 9 13 13 C 1.53006 * 109.47330 * 85.00129 * 11 10 9 14 14 C 1.50700 * 109.47185 * 204.99811 * 11 10 9 15 15 H 1.08004 * 120.00004 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00299 * 179.97438 * 14 11 10 17 17 N 1.31523 * 119.99629 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00412 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46978 * 89.99764 * 18 16 14 20 20 H 1.48498 * 109.47432 * 209.99963 * 18 16 14 21 21 H 1.48506 * 109.47326 * 330.00368 * 18 16 14 22 22 H 1.09007 * 109.46941 * 300.00144 * 1 2 3 23 23 H 1.08993 * 109.47435 * 59.99665 * 1 2 3 24 24 H 1.08993 * 109.47390 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47163 * 239.99847 * 2 1 3 26 26 H 1.08998 * 109.47392 * 119.99859 * 2 1 3 27 27 H 1.07991 * 120.00010 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.00334 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.00604 * 179.72567 * 6 5 4 30 30 H 1.08002 * 119.99604 * 180.02562 * 7 6 5 31 31 H 1.09009 * 109.47012 * 200.00023 * 9 8 3 32 32 H 1.08997 * 109.46940 * 319.99738 * 9 8 3 33 33 H 1.00899 * 111.00053 * 303.95346 * 10 9 8 34 34 H 1.09001 * 109.46313 * 299.99724 * 13 11 10 35 35 H 1.08998 * 109.47130 * 59.99516 * 13 11 10 36 36 H 1.09000 * 109.47362 * 180.02562 * 13 11 10 37 37 H 0.96995 * 119.99522 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0378 -1.1929 5 6 2.8224 3.3406 -1.1928 6 6 2.9542 4.0273 -0.0001 7 6 2.6241 3.4110 1.1922 8 6 2.1648 2.1070 1.1924 9 6 1.8062 1.4345 2.4925 10 7 2.9109 0.5628 2.9138 11 6 2.5958 -0.1114 4.1804 12 1 2.0105 0.5568 4.8120 13 6 1.7898 -1.3805 3.8960 14 6 3.8758 -0.4771 4.8868 15 1 4.8281 -0.2335 4.4394 16 6 3.8312 -1.1228 6.1043 17 7 2.6715 -1.4199 6.6489 18 14 5.4177 -1.5767 6.9795 19 1 5.8303 -0.4600 7.8671 20 1 5.2021 -2.8010 7.7919 21 1 6.4821 -1.8300 5.9753 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2583 1.5014 -2.1245 28 1 3.0796 3.8225 -2.1245 29 1 3.3188 5.0439 0.0004 30 1 2.7267 3.9475 2.1239 31 1 1.6292 2.1917 3.2565 32 1 0.9042 0.8380 2.3564 33 1 3.1372 -0.1075 2.1944 34 1 0.8640 -1.1159 3.3851 35 1 2.3752 -2.0487 3.2644 36 1 1.5557 -1.8805 4.8358 37 1 2.6401 -1.8738 7.5055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082774702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:25 Heat of formation + Delta-G solvation = -6.999872 kcal Electronic energy + Delta-G solvation = -16281.612538 eV Core-core repulsion = 13829.281184 eV Total energy + Delta-G solvation = -2452.331354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61953 -37.71998 -35.21505 -34.44504 -32.50890 -30.42684 -29.51023 -27.26427 -25.98099 -24.51832 -22.64742 -22.13072 -21.29627 -18.45748 -17.19287 -16.88704 -16.77067 -16.07250 -15.75884 -15.06648 -14.69883 -14.57208 -14.34652 -13.98421 -13.89598 -13.53200 -13.18624 -12.91787 -12.85927 -12.71120 -12.62451 -12.43420 -12.18449 -12.10386 -12.00088 -11.56108 -11.42598 -11.03645 -10.48967 -9.66181 -9.47153 -8.93859 -8.09996 -6.21491 0.50833 0.56740 1.42822 1.43153 1.54338 2.43838 2.89290 3.17959 3.75544 3.90437 3.98384 4.09510 4.17392 4.35406 4.43501 4.51534 4.60157 4.68440 4.72589 4.79012 4.82353 4.87820 5.03667 5.08898 5.10595 5.19644 5.29066 5.36777 5.41464 5.66751 5.68106 5.68741 5.80980 5.87230 6.20325 6.26482 6.63414 6.79606 6.93024 7.48464 8.95390 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.006088 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.729323 B = 4597.896477 C = 5075.061102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.085 4.085 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.087 4.087 9 C 0.100 3.900 10 N -0.679 5.679 11 C 0.215 3.785 12 H 0.001 0.999 13 C -0.153 4.153 14 C -0.516 4.516 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.961 3.039 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.270 1.270 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.330 0.670 34 H 0.025 0.975 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 6.223 -15.630 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.086 4.086 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.139 4.139 8 C -0.088 4.088 9 C -0.029 4.029 10 N -0.310 5.310 11 C 0.107 3.893 12 H 0.019 0.981 13 C -0.213 4.213 14 C -0.555 4.555 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.787 3.213 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.195 1.195 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.134 0.866 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.148 0.852 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.468 6.643 -15.151 16.726 hybrid contribution -0.040 -0.937 0.809 1.238 sum -2.507 5.707 -14.342 15.638 Atomic orbital electron populations 1.21704 0.94092 1.02189 1.01838 1.20621 0.96884 0.92477 1.02787 1.19928 0.99338 0.96461 0.92866 1.21271 0.99716 0.95708 0.97436 1.21440 0.99225 0.94636 0.98770 1.21377 1.00337 1.00919 0.92136 1.21195 0.99103 0.94613 0.98975 1.19782 1.00156 0.94835 0.94006 1.20828 0.92839 0.95740 0.93491 1.60787 1.39130 1.25521 1.05611 1.18963 0.94032 0.89880 0.86430 0.98138 1.22212 0.97440 1.00588 1.01040 1.21438 0.93231 1.36577 1.04234 0.92948 1.25715 0.99390 0.95824 0.97946 1.70011 1.25513 1.42498 1.18203 0.85508 0.79859 0.77571 0.78362 1.20360 1.20714 1.19459 0.94038 0.91342 0.91607 0.89341 0.92844 0.83982 0.83393 0.84092 0.86555 0.92586 0.94829 0.85162 0.95576 0.94938 0.91904 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.75 71.98 0.70 -2.59 16 2 C -0.09 -2.34 5.39 29.85 0.16 -2.18 16 3 C -0.09 -2.39 5.13 -19.86 -0.10 -2.49 16 4 C -0.12 -2.84 9.68 22.27 0.22 -2.63 16 5 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 6 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 7 C -0.12 -3.59 9.67 22.27 0.22 -3.37 16 8 C -0.09 -2.84 5.39 -19.87 -0.11 -2.95 16 9 C 0.10 3.80 4.87 85.56 0.42 4.21 16 10 N -0.68 -30.14 6.21 -499.47 -3.10 -33.24 16 11 C 0.22 11.21 2.57 44.17 0.11 11.33 16 12 H 0.00 0.04 7.80 -2.39 -0.02 0.02 16 13 C -0.15 -7.48 8.94 71.98 0.64 -6.84 16 14 C -0.52 -29.44 8.84 25.60 0.23 -29.22 16 15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.53 5.30 84.65 0.45 0.98 16 17 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 18 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H 0.04 1.09 6.72 -2.38 -0.02 1.08 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 26 H 0.05 1.64 5.43 -2.39 -0.01 1.63 16 27 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.12 3.44 8.04 -2.91 -0.02 3.42 16 31 H 0.06 2.23 7.92 -2.38 -0.02 2.22 16 32 H 0.03 1.26 5.14 -2.39 -0.01 1.25 16 33 H 0.33 13.98 6.62 -89.69 -0.59 13.38 16 34 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 35 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 36 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -62.17 297.96 3.00 -59.17 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.45 Total: 21.92 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.38 Total: -41.01 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.86 Total: -86.80 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.17 3.00 -59.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.166 kcal (2) G-P(sol) polarization free energy of solvation -62.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds