Wall clock time and date at job start Sun Mar 29 2020 21:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00094 * 2 1 4 4 C 1.38210 * 119.99873 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99924 * 359.74724 * 4 3 2 6 6 C 1.38213 * 120.00334 * 0.50637 * 5 4 3 7 7 C 1.50696 * 120.00371 * 179.76463 * 6 5 4 8 8 H 1.08999 * 109.47125 * 159.72534 * 7 6 5 9 9 C 1.53005 * 109.47272 * 279.73173 * 7 6 5 10 10 N 1.46906 * 109.46885 * 39.72695 * 7 6 5 11 11 C 1.46902 * 110.99573 * 155.00031 * 10 7 6 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.46668 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00437 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99761 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00064 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00079 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99764 * 17 15 13 19 19 H 1.48496 * 109.47236 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47045 * 299.99764 * 17 15 13 21 21 C 1.38217 * 119.99750 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46859 * 270.02595 * 1 2 3 23 23 H 1.08998 * 109.47116 * 30.02247 * 1 2 3 24 24 H 1.09003 * 109.47311 * 150.02325 * 1 2 3 25 25 H 1.07998 * 120.00040 * 359.97438 * 3 2 1 26 26 H 1.08005 * 119.99937 * 180.02562 * 4 3 2 27 27 H 1.08007 * 119.99876 * 180.26944 * 5 4 3 28 28 H 1.08999 * 109.47115 * 59.99349 * 9 7 6 29 29 H 1.09000 * 109.47030 * 180.02562 * 9 7 6 30 30 H 1.09002 * 109.46644 * 299.99733 * 9 7 6 31 31 H 1.00896 * 111.00309 * 31.04442 * 10 7 6 32 32 H 1.08990 * 109.47358 * 299.99539 * 11 10 7 33 33 H 1.09004 * 109.47457 * 60.00221 * 11 10 7 34 34 H 1.09006 * 109.47203 * 299.99590 * 12 11 10 35 35 H 1.08995 * 109.47152 * 60.00028 * 12 11 10 36 36 H 0.97002 * 120.00167 * 179.97438 * 16 15 13 37 37 H 1.07992 * 119.99868 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0020 8 1 3.6793 -3.2994 0.3537 9 6 4.8066 -2.8193 -1.4182 10 7 5.4974 -2.3952 0.8927 11 6 5.9026 -3.7167 1.3903 12 6 7.1146 -3.5649 2.3118 13 6 7.5306 -4.9206 2.8217 14 1 6.9850 -5.8022 2.5192 15 6 8.6073 -5.0354 3.6753 16 7 9.2715 -3.9618 4.0441 17 14 9.1227 -6.7157 4.3080 18 1 9.4797 -7.5884 3.1608 19 1 10.2990 -6.5685 5.2023 20 1 7.9993 -7.3261 5.0635 21 6 2.1980 -1.1970 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1327 -0.0004 26 1 4.1205 2.1326 0.0010 27 1 5.3517 -0.0001 0.0112 28 1 5.4613 -2.0220 -1.7699 29 1 5.3512 -3.7635 -1.4175 30 1 3.9434 -2.8986 -2.0791 31 1 5.3112 -1.7627 1.6564 32 1 5.0781 -4.1646 1.9447 33 1 6.1648 -4.3573 0.5482 34 1 7.9391 -3.1171 1.7569 35 1 6.8529 -2.9242 3.1538 36 1 10.0287 -4.0425 4.6449 37 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088162245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:05 Heat of formation + Delta-G solvation = 1.299555 kcal Electronic energy + Delta-G solvation = -15599.700298 eV Core-core repulsion = 13147.728834 eV Total energy + Delta-G solvation = -2451.971464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58534 -36.52904 -33.53573 -32.46966 -31.59762 -29.45924 -27.95277 -26.88199 -24.40811 -22.78037 -21.98167 -20.44383 -19.57766 -16.55419 -16.29408 -15.57387 -15.34930 -14.54207 -14.42251 -14.00601 -13.67662 -13.53162 -13.04234 -12.85916 -12.34364 -12.30039 -12.21509 -11.82622 -11.67733 -11.41472 -11.05827 -10.95451 -10.90039 -10.58692 -10.47900 -9.93282 -9.37623 -9.14629 -8.74305 -8.51503 -8.33451 -7.81978 -5.97956 -4.00590 1.40698 1.44074 3.34603 3.38854 3.41239 3.80228 4.44093 4.63248 4.79772 4.88632 4.97624 5.20771 5.24929 5.37853 5.45506 5.49357 5.57547 5.67398 5.68475 5.72929 5.97837 6.05153 6.17555 6.18249 6.33414 6.41828 6.50581 6.56361 6.59113 6.73756 7.01437 7.08008 7.51957 7.75241 7.84395 7.98240 8.10622 8.45449 9.06464 9.62999 11.13441 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.043562 B = 0.004253 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.605785 B = 6582.754337 C = 6687.728121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.077 4.077 7 C 0.119 3.881 8 H 0.045 0.955 9 C -0.132 4.132 10 N -0.684 5.684 11 C 0.066 3.934 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.118 4.118 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.338 0.662 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 8.518 -9.206 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.122 4.122 6 C -0.078 4.078 7 C 0.010 3.990 8 H 0.063 0.937 9 C -0.190 4.190 10 N -0.316 5.316 11 C -0.063 4.063 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.136 4.136 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.151 0.849 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.504 8.559 -9.612 19.391 hybrid contribution -0.334 -1.080 1.098 1.576 sum -14.838 7.480 -8.515 18.671 Atomic orbital electron populations 1.20763 0.91488 1.02464 1.02158 1.19839 0.95810 0.93188 1.00440 1.20980 0.94376 0.97203 1.02018 1.21166 0.94168 0.98135 1.00229 1.21150 1.00893 0.91407 0.98783 1.20077 0.93315 0.95426 0.98939 1.20462 0.90842 0.92414 0.95321 0.93667 1.21751 1.00513 1.02255 0.94469 1.60741 1.34339 1.13435 1.23045 1.22215 0.98386 0.87708 0.97941 1.19060 0.91842 0.96880 0.93374 1.21144 1.13732 0.93224 1.28009 0.92834 1.25000 0.96398 0.96564 0.96361 1.69964 1.20411 1.28122 1.34764 0.86650 0.78003 0.84488 0.78797 1.20219 1.21267 1.20304 1.20922 0.93607 0.97468 1.01608 0.91361 0.91781 0.91725 0.86546 0.86174 0.84891 0.92016 0.92180 0.93228 0.84387 0.96677 0.92242 0.95630 0.96854 0.92945 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.13 -1.42 9.70 -39.58 -0.38 -1.81 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 5 C -0.10 -1.41 9.00 -39.58 -0.36 -1.77 16 6 C -0.08 -1.08 4.72 -104.63 -0.49 -1.57 16 7 C 0.12 1.83 2.82 -68.86 -0.19 1.63 16 8 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 9 C -0.13 -1.87 9.39 37.16 0.35 -1.52 16 10 N -0.68 -12.44 5.69 -107.94 -0.61 -13.06 16 11 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.12 -1.49 9.33 -39.58 -0.37 -1.85 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 24 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 26 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 27 H 0.13 1.87 7.71 -52.48 -0.40 1.46 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.34 6.13 7.98 -39.29 -0.31 5.82 16 32 H 0.01 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.06 1.27 7.44 -51.93 -0.39 0.88 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.12 1.34 8.04 -52.49 -0.42 0.91 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -30.31 309.34 -8.98 -39.29 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.07 Total: 1.49 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.68 Total: -22.78 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.12 Total: -39.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.31 -8.98 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.593 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds