Wall clock time and date at job start Sun Mar 29 2020 21:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00094 * 2 1 4 4 C 1.38210 * 119.99873 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99924 * 359.74724 * 4 3 2 6 6 C 1.38213 * 120.00334 * 0.50637 * 5 4 3 7 7 C 1.50696 * 120.00371 * 179.76463 * 6 5 4 8 8 H 1.08999 * 109.47125 * 159.72534 * 7 6 5 9 9 C 1.53005 * 109.47272 * 279.73173 * 7 6 5 10 10 N 1.46906 * 109.46885 * 39.72695 * 7 6 5 11 11 C 1.46902 * 110.99573 * 155.00031 * 10 7 6 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.46668 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00437 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99761 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00064 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00079 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99764 * 17 15 13 19 19 H 1.48496 * 109.47236 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47045 * 299.99764 * 17 15 13 21 21 C 1.38217 * 119.99750 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46859 * 270.02595 * 1 2 3 23 23 H 1.08998 * 109.47116 * 30.02247 * 1 2 3 24 24 H 1.09003 * 109.47311 * 150.02325 * 1 2 3 25 25 H 1.07998 * 120.00040 * 359.97438 * 3 2 1 26 26 H 1.08005 * 119.99937 * 180.02562 * 4 3 2 27 27 H 1.08007 * 119.99876 * 180.26944 * 5 4 3 28 28 H 1.08999 * 109.47115 * 59.99349 * 9 7 6 29 29 H 1.09000 * 109.47030 * 180.02562 * 9 7 6 30 30 H 1.09002 * 109.46644 * 299.99733 * 9 7 6 31 31 H 1.00896 * 111.00309 * 31.04442 * 10 7 6 32 32 H 1.08990 * 109.47358 * 299.99539 * 11 10 7 33 33 H 1.09004 * 109.47457 * 60.00221 * 11 10 7 34 34 H 1.09006 * 109.47203 * 299.99590 * 12 11 10 35 35 H 1.08995 * 109.47152 * 60.00028 * 12 11 10 36 36 H 0.97002 * 120.00167 * 179.97438 * 16 15 13 37 37 H 1.07992 * 119.99868 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0064 6 6 3.5806 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0020 8 1 3.6793 -3.2994 0.3537 9 6 4.8066 -2.8193 -1.4182 10 7 5.4974 -2.3952 0.8927 11 6 5.9026 -3.7167 1.3903 12 6 7.1146 -3.5649 2.3118 13 6 7.5306 -4.9206 2.8217 14 1 6.9850 -5.8022 2.5192 15 6 8.6073 -5.0354 3.6753 16 7 9.2715 -3.9618 4.0441 17 14 9.1227 -6.7157 4.3080 18 1 9.4797 -7.5884 3.1608 19 1 10.2990 -6.5685 5.2023 20 1 7.9993 -7.3261 5.0635 21 6 2.1980 -1.1970 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1327 -0.0004 26 1 4.1205 2.1326 0.0010 27 1 5.3517 -0.0001 0.0112 28 1 5.4613 -2.0220 -1.7699 29 1 5.3512 -3.7635 -1.4175 30 1 3.9434 -2.8986 -2.0791 31 1 5.3112 -1.7627 1.6564 32 1 5.0781 -4.1646 1.9447 33 1 6.1648 -4.3573 0.5482 34 1 7.9391 -3.1171 1.7569 35 1 6.8529 -2.9242 3.1538 36 1 10.0287 -4.0425 4.6449 37 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088162245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:05 Heat of formation + Delta-G solvation = -15.794706 kcal Electronic energy + Delta-G solvation = -15600.441561 eV Core-core repulsion = 13147.728834 eV Total energy + Delta-G solvation = -2452.712727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57868 -37.89950 -35.43208 -33.70691 -32.94507 -30.81507 -29.52518 -27.70700 -26.24576 -24.11017 -22.95102 -22.28015 -20.68857 -18.48571 -17.59184 -16.83712 -16.59159 -16.32666 -15.70318 -15.22539 -14.78878 -14.70390 -14.36121 -14.10423 -13.93876 -13.64135 -13.06072 -13.03087 -12.95414 -12.85234 -12.68917 -12.54985 -12.39950 -11.97051 -11.86276 -11.57810 -11.40544 -11.21815 -10.56492 -9.69986 -9.46321 -9.33202 -8.20543 -6.32478 0.44873 0.50476 1.40047 1.43589 1.51535 2.40342 2.85062 3.12689 3.30074 3.70347 4.01010 4.07614 4.28664 4.32649 4.41639 4.50851 4.55366 4.61545 4.66726 4.76290 4.85774 4.90316 4.96196 5.01784 5.05693 5.18043 5.31048 5.36146 5.43280 5.59542 5.65211 5.68863 5.71023 5.80724 6.12838 6.16980 6.28747 6.49920 6.84389 7.36802 8.91478 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.043562 B = 0.004253 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.605785 B = 6582.754337 C = 6687.728121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.091 4.091 7 C 0.121 3.879 8 H 0.046 0.954 9 C -0.128 4.128 10 N -0.686 5.686 11 C 0.085 3.915 12 C 0.033 3.967 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.128 4.128 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.337 0.663 32 H 0.017 0.983 33 H 0.060 0.940 34 H -0.005 1.005 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 8.237 -9.602 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.091 4.091 7 C 0.012 3.988 8 H 0.064 0.936 9 C -0.185 4.185 10 N -0.318 5.318 11 C -0.044 4.044 12 C -0.004 4.004 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.146 4.146 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.161 0.839 26 H 0.156 0.844 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.013 0.987 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.247 8.282 -10.027 20.810 hybrid contribution 0.158 -0.894 1.198 1.503 sum -16.089 7.388 -8.829 19.783 Atomic orbital electron populations 1.20819 0.89244 1.03699 1.02960 1.20227 0.97513 0.92717 0.99039 1.21343 0.94135 0.98380 1.00777 1.21413 0.94902 0.98167 0.99586 1.21139 1.00407 0.92296 1.00259 1.19969 0.93971 0.94587 1.00615 1.20494 0.89795 0.93606 0.94938 0.93598 1.21719 1.01194 1.01412 0.94213 1.60663 1.36506 1.11544 1.23069 1.21829 0.96299 0.89409 0.96872 1.18905 0.92912 0.95552 0.93069 1.21585 1.14274 0.94211 1.28447 0.92124 1.25989 0.96287 1.00996 0.96436 1.70106 1.20937 1.30735 1.35386 0.85463 0.77830 0.79099 0.78416 1.19094 1.20742 1.19122 1.21104 0.93059 0.98688 1.01788 0.90640 0.90163 0.90973 0.83884 0.84396 0.86309 0.92599 0.93128 0.91015 0.84546 0.96502 0.92104 0.98664 0.99266 0.92712 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.09 -1.94 5.88 -19.86 -0.12 -2.06 16 3 C -0.13 -2.55 9.70 22.27 0.22 -2.34 16 4 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 5 C -0.12 -3.33 9.00 22.27 0.20 -3.13 16 6 C -0.09 -2.50 4.72 -19.87 -0.09 -2.59 16 7 C 0.12 3.68 2.82 44.17 0.12 3.81 16 8 H 0.05 1.40 7.66 -2.39 -0.02 1.38 16 9 C -0.13 -3.56 9.39 71.98 0.68 -2.88 16 10 N -0.69 -25.59 5.69 -495.42 -2.82 -28.40 16 11 C 0.08 3.70 5.42 86.31 0.47 4.16 16 12 C 0.03 1.82 5.23 29.85 0.16 1.97 16 13 C -0.55 -31.86 9.11 25.60 0.23 -31.63 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 C -0.13 -3.05 9.33 22.27 0.21 -2.84 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 24 H 0.07 0.90 8.09 -2.39 -0.02 0.89 16 25 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 26 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.12 3.47 7.71 -2.91 -0.02 3.45 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.48 7.45 -2.39 -0.02 1.47 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.34 12.66 7.98 -89.70 -0.72 11.95 16 32 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 33 H 0.06 2.63 7.44 -2.38 -0.02 2.61 16 34 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.13 2.69 8.04 -2.91 -0.02 2.67 16 Total: -1.00 -65.37 309.34 3.27 -62.09 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.31 Total: 17.40 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.47 Total: -40.38 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.53 Total: -85.90 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.37 3.27 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.299 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds