Wall clock time and date at job start Sun Mar 29 2020 21:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47542 * 2 1 4 4 C 1.36935 * 120.00130 * 272.57979 * 3 2 1 5 5 H 1.07997 * 120.00038 * 317.09385 * 4 3 2 6 6 C 1.38814 * 119.99824 * 137.09034 * 4 3 2 7 7 N 1.31619 * 120.00037 * 344.79247 * 6 4 3 8 8 Si 1.86800 * 119.99873 * 164.78492 * 6 4 3 9 9 H 1.48502 * 109.47124 * 90.00099 * 8 6 4 10 10 H 1.48495 * 109.47175 * 210.00434 * 8 6 4 11 11 H 1.48504 * 109.47052 * 330.00358 * 8 6 4 12 12 C 1.46509 * 119.99725 * 92.57874 * 3 2 1 13 13 C 1.50695 * 109.47037 * 90.00451 * 12 3 2 14 14 C 1.38263 * 119.99829 * 259.99695 * 13 12 3 15 15 C 1.38212 * 120.00099 * 179.72371 * 14 13 12 16 16 C 1.38254 * 119.99734 * 0.27611 * 15 14 13 17 17 C 1.50699 * 119.99687 * 179.97438 * 16 15 14 18 18 C 1.38212 * 120.00407 * 359.95809 * 16 15 14 19 19 C 1.38204 * 120.00319 * 80.18780 * 13 12 3 20 20 C 1.50698 * 120.00181 * 0.02562 * 19 13 12 21 21 H 1.08995 * 109.47164 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46830 * 299.99714 * 1 2 3 23 23 H 1.09003 * 109.47087 * 59.99287 * 1 2 3 24 24 H 1.09002 * 109.47533 * 240.00033 * 2 1 3 25 25 H 1.09006 * 109.47394 * 120.00009 * 2 1 3 26 26 H 0.96999 * 119.99386 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.46957 * 330.00086 * 12 3 2 28 28 H 1.08994 * 109.46781 * 210.00283 * 12 3 2 29 29 H 1.07999 * 119.99863 * 359.97438 * 14 13 12 30 30 H 1.08004 * 119.99806 * 180.25558 * 15 14 13 31 31 H 1.09001 * 109.46715 * 90.00665 * 17 16 15 32 32 H 1.08999 * 109.47225 * 209.99781 * 17 16 15 33 33 H 1.08997 * 109.47882 * 330.00762 * 17 16 15 34 34 H 1.07994 * 120.00250 * 180.02562 * 18 16 15 35 35 H 1.08993 * 109.47324 * 270.21687 * 20 19 13 36 36 H 1.09002 * 109.46900 * 30.21444 * 20 19 13 37 37 H 1.08997 * 109.47510 * 150.21020 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1964 2.0445 -1.1847 5 1 2.6539 1.5398 -2.0227 6 6 1.7886 3.3657 -1.3084 7 7 0.9743 3.8893 -0.4168 8 14 2.3957 4.4002 -2.7404 9 1 1.4569 4.2635 -3.8829 10 1 2.4677 5.8245 -2.3265 11 1 3.7451 3.9350 -3.1501 12 6 2.3164 2.0528 1.2676 13 6 3.7568 1.8099 1.6381 14 6 4.0767 0.8397 2.5699 15 6 5.3981 0.6130 2.9056 16 6 6.3996 1.3602 2.3139 17 6 7.8404 1.1134 2.6804 18 6 6.0795 2.3333 1.3861 19 6 4.7577 2.5595 1.0496 20 6 4.4087 3.6203 0.0377 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.6897 4.8126 -0.5031 27 1 1.6683 1.6571 2.0495 28 1 2.1445 3.1237 1.1605 29 1 3.2943 0.2563 3.0323 30 1 5.6483 -0.1477 3.6304 31 1 8.2605 0.3594 2.0147 32 1 8.4046 2.0407 2.5810 33 1 7.8983 0.7615 3.7104 34 1 6.8619 2.9167 0.9237 35 1 4.3973 3.1811 -0.9598 36 1 3.4246 4.0300 0.2655 37 1 5.1515 4.4170 0.0755 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123248376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:15 Heat of formation + Delta-G solvation = 30.012889 kcal Electronic energy + Delta-G solvation = -16899.684308 eV Core-core repulsion = 14448.957947 eV Total energy + Delta-G solvation = -2450.726361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98113 -35.91678 -32.87381 -32.03955 -31.21298 -29.15880 -27.23966 -26.38956 -24.28867 -23.14696 -21.33182 -20.48815 -19.08435 -16.74092 -15.25451 -14.98985 -14.61885 -14.13137 -14.03867 -13.62848 -13.38011 -12.73132 -12.49655 -12.36949 -12.18615 -12.09439 -11.60646 -11.46354 -11.10820 -11.01063 -10.91965 -10.56805 -10.49220 -10.26394 -10.21835 -9.95408 -9.72166 -9.64367 -8.44691 -8.03793 -7.64102 -6.49052 -5.79917 -3.41988 2.07978 2.11515 3.31544 3.39823 3.41547 4.38546 4.49824 5.30243 5.33993 5.36154 5.62221 5.66040 5.74258 5.82569 5.90407 6.03744 6.18306 6.21685 6.26177 6.42117 6.48959 6.56194 6.58782 6.71879 6.75013 6.81927 6.91894 7.05046 7.17064 7.18744 7.31257 7.34339 7.54429 7.72345 7.81201 7.86850 8.56493 9.19492 9.78268 10.42612 11.19438 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.010064 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.998474 B = 2781.550973 C = 3633.651380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 N -0.576 5.576 4 C -0.252 4.252 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.887 5.887 8 Si 0.883 3.117 9 H -0.286 1.286 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.177 3.823 13 C -0.081 4.081 14 C -0.120 4.120 15 C -0.136 4.136 16 C -0.110 4.110 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.052 4.052 20 C -0.119 4.119 21 H 0.028 0.972 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.255 0.745 27 H 0.030 0.970 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -3.639 4.874 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 N -0.296 5.296 4 C -0.382 4.382 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.213 1.213 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.051 3.949 13 C -0.084 4.084 14 C -0.138 4.138 15 C -0.155 4.155 16 C -0.110 4.110 17 C -0.162 4.162 18 C -0.150 4.150 19 C -0.053 4.053 20 C -0.175 4.175 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.073 -3.473 4.867 9.261 hybrid contribution 0.283 0.516 -0.755 0.958 sum 7.355 -2.957 4.111 8.930 Atomic orbital electron populations 1.22237 0.99593 0.98115 1.01947 1.20850 0.91910 0.87416 0.97954 1.43657 1.73862 1.10051 1.01996 1.18918 1.33431 0.94962 0.90927 0.92738 1.25268 0.96240 0.99372 0.96914 1.69942 1.32608 1.14187 1.36161 0.86685 0.79125 0.80095 0.82893 1.21317 1.21171 1.19942 1.19955 0.86253 1.01803 0.86878 1.21132 0.99572 0.94028 0.93626 1.20995 0.95551 0.98494 0.98810 1.20787 0.92967 1.00320 1.01375 1.19647 0.94992 0.97765 0.98614 1.20675 0.93172 1.01452 1.00878 1.20836 0.95899 0.99168 0.99071 1.19809 0.92107 0.96972 0.96376 1.21150 1.02323 0.95374 0.98703 0.95316 0.93836 0.92653 0.94369 0.95005 0.93445 0.95139 0.87909 0.87219 0.87500 0.92059 0.92281 0.92335 0.87327 0.89949 0.89018 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.23 37.16 0.38 -2.87 16 2 C 0.14 3.12 6.39 -4.04 -0.03 3.09 16 3 N -0.58 -14.01 2.37 -174.61 -0.41 -14.43 16 4 C -0.25 -6.59 7.42 -15.06 -0.11 -6.70 16 5 H 0.06 1.47 7.87 -52.49 -0.41 1.05 16 6 C 0.02 0.58 2.99 -17.43 -0.05 0.53 16 7 N -0.89 -24.12 11.27 55.49 0.63 -23.49 16 8 Si 0.88 20.71 27.61 -169.99 -4.69 16.02 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.18 4.11 4.99 -5.19 -0.03 4.09 16 13 C -0.08 -1.71 5.46 -104.63 -0.57 -2.28 16 14 C -0.12 -2.24 9.67 -39.58 -0.38 -2.62 16 15 C -0.14 -2.30 9.70 -39.58 -0.38 -2.68 16 16 C -0.11 -1.83 5.88 -104.63 -0.62 -2.44 16 17 C -0.10 -1.33 10.01 36.01 0.36 -0.97 16 18 C -0.13 -2.41 9.36 -39.58 -0.37 -2.78 16 19 C -0.05 -1.08 5.88 -104.63 -0.62 -1.70 16 20 C -0.12 -2.55 7.23 36.00 0.26 -2.29 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 25 H 0.03 0.63 8.05 -51.93 -0.42 0.22 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 28 H 0.10 2.64 4.14 -51.93 -0.22 2.43 16 29 H 0.11 1.88 8.04 -52.49 -0.42 1.46 16 30 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.08 1.89 5.68 -51.93 -0.29 1.59 16 36 H 0.09 2.16 4.35 -51.93 -0.23 1.94 16 37 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 293.17 15.07 4.42 4.42 Total: -1.00 -27.13 293.17 -7.97 -35.10 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.75 Total: 2.02 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.15 Total: -19.63 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.21 Total: -37.92 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.69 Total: 16.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.13 -7.97 -35.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123248376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.108 kcal (2) G-P(sol) polarization free energy of solvation -27.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds