Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47182 * 2 1 4 4 C 1.36939 * 119.99750 * 265.78180 * 3 2 1 5 5 H 1.08004 * 119.99967 * 146.21464 * 4 3 2 6 6 C 1.38808 * 120.00053 * 326.21623 * 4 3 2 7 7 N 1.31618 * 120.00061 * 337.68854 * 6 4 3 8 8 Si 1.86805 * 119.99959 * 157.68840 * 6 4 3 9 9 H 1.48493 * 109.47079 * 59.99803 * 8 6 4 10 10 H 1.48505 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46991 * 299.99453 * 8 6 4 12 12 C 1.46499 * 120.00455 * 85.77970 * 3 2 1 13 13 C 1.53000 * 109.46817 * 89.99806 * 12 3 2 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 12 3 15 15 C 1.38249 * 119.99594 * 90.00397 * 14 13 12 16 16 C 1.38229 * 119.99899 * 179.72579 * 15 14 13 17 17 C 1.38241 * 119.99992 * 0.25778 * 16 15 14 18 18 C 1.50705 * 119.99769 * 179.97438 * 17 16 15 19 19 C 1.38232 * 119.99885 * 0.02562 * 17 16 15 20 20 C 1.38231 * 120.00689 * 270.24194 * 14 13 12 21 21 H 1.09003 * 109.46697 * 60.00333 * 1 2 3 22 22 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47087 * 300.00705 * 1 2 3 24 24 H 1.08994 * 109.47580 * 239.99648 * 2 1 3 25 25 H 1.08998 * 109.46968 * 119.99308 * 2 1 3 26 26 H 0.97003 * 120.00097 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47051 * 330.00678 * 12 3 2 28 28 H 1.08997 * 109.47199 * 210.00152 * 12 3 2 29 29 H 1.09007 * 109.46823 * 60.00730 * 13 12 3 30 30 H 1.09002 * 109.47886 * 300.00459 * 13 12 3 31 31 H 1.08000 * 119.99637 * 0.02562 * 15 14 13 32 32 H 1.07997 * 120.00422 * 180.27836 * 16 15 14 33 33 H 1.09004 * 109.46948 * 90.00292 * 18 17 16 34 34 H 1.08999 * 109.46666 * 209.99770 * 18 17 16 35 35 H 1.08993 * 109.46870 * 330.00140 * 18 17 16 36 36 H 1.08009 * 119.99623 * 179.97438 * 19 17 16 37 37 H 1.08000 * 120.00026 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3289 1.9976 -1.1827 5 1 2.1597 3.0579 -1.2998 6 6 2.8609 1.2598 -2.2312 7 7 3.4698 0.1181 -1.9900 8 14 2.7128 1.8872 -3.9845 9 1 3.3853 3.2064 -4.0966 10 1 3.3568 0.9223 -4.9116 11 1 1.2780 2.0312 -4.3391 12 6 2.1746 2.1030 1.2652 13 6 3.5853 1.8747 1.8118 14 6 3.7462 2.6177 3.1130 15 6 3.4328 1.9959 4.3073 16 6 3.5858 2.6754 5.5012 17 6 4.0471 3.9786 5.5007 18 6 4.2134 4.7196 6.8024 19 6 4.3549 4.6022 4.3061 20 6 4.2025 3.9225 3.1121 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.8419 -0.3973 -2.7227 27 1 1.4425 1.7371 1.9850 28 1 2.0180 3.1686 1.0974 29 1 4.3174 2.2407 1.0919 30 1 3.7420 0.8091 1.9796 31 1 3.0730 0.9776 4.3077 32 1 3.3452 2.1882 6.4346 33 1 5.2199 4.5561 7.1875 34 1 4.0565 5.7854 6.6363 35 1 3.4840 4.3532 7.5247 36 1 4.7150 5.6205 4.3056 37 1 4.4433 4.4097 2.1788 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124119828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = 24.082383 kcal Electronic energy + Delta-G solvation = -15974.833607 eV Core-core repulsion = 13523.850080 eV Total energy + Delta-G solvation = -2450.983527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.14123 -36.13392 -33.65832 -31.45870 -30.61840 -30.29435 -28.34035 -25.76780 -23.77319 -22.40773 -22.30116 -20.43891 -19.62057 -16.58012 -15.73455 -15.17588 -14.88271 -14.69947 -13.86722 -13.76293 -13.67254 -13.13731 -12.78053 -12.46305 -12.42886 -12.03275 -11.98856 -11.63688 -11.28947 -10.96894 -10.84805 -10.72197 -10.62664 -10.53466 -10.22276 -9.85487 -9.70723 -9.52365 -8.62914 -8.46728 -8.12610 -6.56994 -5.75690 -3.28004 1.66119 1.70089 3.38932 3.44815 3.47258 4.06013 4.51133 5.02171 5.04077 5.26529 5.34602 5.35796 5.41208 5.58544 5.71547 5.80802 5.90253 5.92443 6.05492 6.32663 6.35201 6.37659 6.41044 6.58726 6.59546 6.72485 6.76608 6.78586 6.82789 6.92037 7.15874 7.23034 7.30431 7.38491 7.78878 7.85108 8.53865 9.22645 9.86658 10.43105 11.24898 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.005550 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.490880 B = 5043.977466 C = 5498.805703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 N -0.585 5.585 4 C -0.255 4.255 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.158 3.842 13 C -0.102 4.102 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.117 4.117 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.099 0.901 25 H 0.019 0.981 26 H 0.254 0.746 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 4.868 12.817 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.304 5.304 4 C -0.385 4.385 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.031 3.969 13 C -0.142 4.142 14 C -0.065 4.065 15 C -0.138 4.138 16 C -0.139 4.139 17 C -0.111 4.111 18 C -0.165 4.165 19 C -0.138 4.138 20 C -0.135 4.135 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.117 0.883 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.279 4.742 12.679 13.539 hybrid contribution 0.014 0.223 -0.921 0.947 sum 0.293 4.965 11.758 12.767 Atomic orbital electron populations 1.22317 1.01001 0.98627 1.00347 1.20949 0.89717 0.86542 1.01717 1.43966 1.73713 1.11800 1.00955 1.19062 1.35814 0.93965 0.89683 0.92120 1.25074 0.97100 0.97910 0.99085 1.69978 1.36528 1.15867 1.30835 0.86462 0.77930 0.78096 0.84881 1.20788 1.21649 1.20994 1.20871 0.91843 0.96117 0.88098 1.21377 1.02132 0.98943 0.91740 1.20315 0.95862 0.94388 0.95935 1.21068 1.00764 0.99974 0.92041 1.20939 1.00855 0.94319 0.97758 1.19783 1.01308 0.94899 0.95063 1.20718 1.01707 0.99629 0.94475 1.20962 1.01095 0.99537 0.92188 1.21110 0.99992 0.94593 0.97844 0.93301 0.94749 0.94948 0.88344 0.96286 0.93561 0.94777 0.93959 0.90788 0.91902 0.86380 0.86763 0.91750 0.91970 0.91996 0.86708 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 37.16 0.38 -3.01 16 2 C 0.14 3.28 5.97 -4.04 -0.02 3.25 16 3 N -0.58 -14.64 2.45 -173.24 -0.43 -15.06 16 4 C -0.26 -6.97 9.49 -15.06 -0.14 -7.12 16 5 H 0.06 1.65 7.92 -52.48 -0.42 1.24 16 6 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 7 N -0.89 -25.47 11.32 55.49 0.63 -24.84 16 8 Si 0.90 21.57 29.61 -169.99 -5.03 16.54 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.16 3.39 5.67 -4.04 -0.02 3.36 16 13 C -0.10 -2.04 5.67 -27.88 -0.16 -2.20 16 14 C -0.06 -1.10 5.13 -104.62 -0.54 -1.64 16 15 C -0.12 -1.86 9.70 -39.58 -0.38 -2.25 16 16 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 17 C -0.11 -1.45 5.88 -104.62 -0.62 -2.06 16 18 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 19 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 20 C -0.12 -1.87 9.70 -39.59 -0.38 -2.25 16 21 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.10 2.66 5.32 -51.93 -0.28 2.38 16 25 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 28 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 29 H 0.07 1.64 8.09 -51.92 -0.42 1.22 16 30 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -28.71 309.41 -8.70 -37.41 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.15 Total: -0.16 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.38 Total: -18.55 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.20 Total: -39.90 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.71 -8.70 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124119828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.491 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds