Wall clock time and date at job start Sun Mar 29 2020 21:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 119.99973 * 2 1 4 4 C 1.38211 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99478 * 359.70891 * 5 4 3 7 7 C 1.38206 * 119.99874 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00034 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47099 * 324.99869 * 8 7 2 10 10 C 1.52998 * 109.47163 * 85.00123 * 8 7 2 11 11 N 1.46906 * 109.46990 * 204.99866 * 8 7 2 12 12 C 1.46898 * 110.99888 * 56.04706 * 11 8 7 13 13 C 1.46902 * 110.99573 * 180.02562 * 11 8 7 14 14 C 1.50708 * 109.46760 * 169.99885 * 13 11 8 15 15 H 1.07997 * 120.00113 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99808 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99916 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99878 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47084 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47009 * 119.99701 * 18 16 14 21 21 H 1.48499 * 109.47361 * 240.00066 * 18 16 14 22 22 H 1.09003 * 109.46727 * 270.02906 * 1 2 3 23 23 H 1.09006 * 109.46890 * 30.02168 * 1 2 3 24 24 H 1.08998 * 109.47238 * 150.02586 * 1 2 3 25 25 H 1.08001 * 120.00407 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.00234 * 179.97438 * 4 3 2 27 27 H 1.07994 * 119.99971 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.00093 * 180.30031 * 6 5 4 29 29 H 1.09000 * 109.47321 * 59.99882 * 10 8 7 30 30 H 1.08997 * 109.47598 * 180.02562 * 10 8 7 31 31 H 1.09002 * 109.46781 * 299.99834 * 10 8 7 32 32 H 1.08997 * 109.47334 * 60.00212 * 12 11 8 33 33 H 1.09000 * 109.46674 * 180.02562 * 12 11 8 34 34 H 1.08995 * 109.47296 * 299.99911 * 12 11 8 35 35 H 1.08993 * 109.47196 * 289.99473 * 13 11 8 36 36 H 1.09000 * 109.47010 * 50.00282 * 13 11 8 37 37 H 0.96996 * 119.99080 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0061 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0005 9 1 0.5336 -2.3956 0.5896 10 6 1.0812 -2.8811 -1.4365 11 7 2.2866 -3.5536 0.5864 12 6 2.7330 -3.1801 1.9351 13 6 1.5832 -4.8432 0.6024 14 6 2.5495 -5.9377 0.9762 15 1 3.5825 -5.6991 1.1817 16 6 2.1143 -7.2435 1.0568 17 7 0.8560 -7.5339 0.8080 18 14 3.3118 -8.6001 1.5208 19 1 4.6576 -8.0155 1.7494 20 1 2.8450 -9.2693 2.7615 21 1 3.3849 -9.5938 0.4198 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6584 2.1327 -0.0004 26 1 4.1205 2.1327 0.0001 27 1 5.3517 0.0000 0.0005 28 1 4.1206 -2.1323 0.0110 29 1 1.9921 -2.9875 -2.0256 30 1 0.5358 -3.8248 -1.4365 31 1 0.4564 -2.1009 -1.8712 32 1 1.8647 -3.0297 2.5767 33 1 3.3549 -3.9758 2.3453 34 1 3.3111 -2.2574 1.8840 35 1 0.7749 -4.8071 1.3327 36 1 1.1710 -5.0445 -0.3864 37 1 0.5500 -8.4526 0.8643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193425959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:10 Heat of formation + Delta-G solvation = 24.670075 kcal Electronic energy + Delta-G solvation = -16509.197721 eV Core-core repulsion = 14058.239679 eV Total energy + Delta-G solvation = -2450.958042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65323 -36.65963 -33.15619 -32.52351 -30.99947 -29.34875 -27.25451 -26.55669 -24.40418 -23.35289 -21.81136 -20.64478 -19.15647 -16.62086 -16.02195 -15.53993 -14.78488 -14.60048 -13.99842 -13.83560 -13.59306 -13.28954 -12.95567 -12.72055 -12.26111 -12.02641 -11.85794 -11.64565 -11.43363 -11.13964 -10.96710 -10.82416 -10.78934 -10.64829 -10.45065 -10.13763 -9.66543 -9.17021 -8.44493 -8.39892 -8.26200 -7.21892 -6.01800 -4.02266 1.60995 1.68704 3.31515 3.38970 3.43796 4.02288 4.43210 4.88506 5.05586 5.09721 5.21240 5.34464 5.37947 5.46484 5.71939 5.72203 5.83320 5.90210 5.91650 6.02378 6.16476 6.27376 6.31244 6.36004 6.47057 6.50200 6.73184 6.76364 6.79297 6.82562 7.00243 7.31287 7.35836 7.37493 7.82753 8.11822 8.23118 8.57504 9.05547 9.61605 11.09261 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.006182 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.142307 B = 4528.482728 C = 4940.659495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.090 4.090 7 C -0.066 4.066 8 C 0.116 3.884 9 H 0.040 0.960 10 C -0.139 4.139 11 N -0.533 5.533 12 C 0.030 3.970 13 C 0.188 3.812 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.053 0.947 35 H -0.011 1.011 36 H 0.038 0.962 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 15.043 -1.816 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.108 4.108 7 C -0.066 4.066 8 C 0.007 3.993 9 H 0.057 0.943 10 C -0.196 4.196 11 N -0.258 5.258 12 C -0.118 4.118 13 C 0.064 3.936 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.007 0.993 36 H 0.056 0.944 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.877 14.824 -2.120 15.092 hybrid contribution -0.149 -0.700 0.829 1.095 sum 1.727 14.125 -1.292 14.288 Atomic orbital electron populations 1.20860 0.91730 1.02700 1.02174 1.19742 0.95821 0.92701 1.00570 1.20872 0.94230 0.96980 1.02610 1.21018 0.94242 0.97745 1.01617 1.21151 0.99595 0.92671 1.01873 1.21276 0.93971 0.98514 0.97005 1.19883 0.94103 0.93967 0.98677 1.20491 0.93500 0.88871 0.96431 0.94264 1.21852 1.01610 1.01250 0.94903 1.62140 1.40328 1.03045 1.20313 1.22367 0.99091 1.00541 0.89846 1.19824 0.92934 0.83880 0.96999 1.21204 0.96184 0.91172 1.45721 0.91850 1.24983 0.95223 0.98762 0.95696 1.69970 1.14771 1.19174 1.50013 0.86460 0.81258 0.81852 0.77960 1.19687 1.21170 1.21039 0.91489 0.91975 0.90966 0.86757 0.86836 0.86571 0.84317 0.91983 0.91247 0.93248 0.97359 0.90767 0.92839 0.99308 0.94378 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.22 36.01 0.33 -1.13 16 2 C -0.09 -1.27 5.88 -104.63 -0.62 -1.89 16 3 C -0.13 -1.67 9.70 -39.59 -0.38 -2.05 16 4 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 5 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 6 C -0.09 -1.44 7.32 -39.58 -0.29 -1.73 16 7 C -0.07 -1.08 4.32 -104.62 -0.45 -1.54 16 8 C 0.12 2.14 1.59 -68.86 -0.11 2.03 16 9 H 0.04 0.75 6.99 -51.93 -0.36 0.38 16 10 C -0.14 -2.43 8.78 37.16 0.33 -2.10 16 11 N -0.53 -11.51 3.76 -237.73 -0.89 -12.41 16 12 C 0.03 0.60 8.63 60.06 0.52 1.12 16 13 C 0.19 4.88 4.54 -4.97 -0.02 4.86 16 14 C -0.50 -14.12 8.46 -34.44 -0.29 -14.41 16 15 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.07 0.93 5.43 -51.93 -0.28 0.65 16 25 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 26 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.14 2.40 6.83 -52.49 -0.36 2.05 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.32 6.20 -51.93 -0.32 1.00 16 31 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 34 H 0.05 0.96 5.29 -51.93 -0.27 0.69 16 35 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 36 H 0.04 1.03 5.83 -51.93 -0.30 0.73 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -29.57 292.35 -8.15 -37.72 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.50 Total: -0.76 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.88 Total: -19.64 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.16 Total: -38.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.57 -8.15 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193425959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.394 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds