Wall clock time and date at job start Sun Mar 29 2020 21:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46698 * 2 1 4 4 C 1.36937 * 119.99764 * 96.02586 * 3 2 1 5 5 H 1.08004 * 119.99906 * 176.45873 * 4 3 2 6 6 C 1.38813 * 120.00099 * 356.46476 * 4 3 2 7 7 N 1.31618 * 119.99641 * 316.92948 * 6 4 3 8 8 Si 1.86803 * 120.00017 * 136.93725 * 6 4 3 9 9 H 1.48500 * 109.47112 * 89.99693 * 8 6 4 10 10 H 1.48499 * 109.46723 * 209.99415 * 8 6 4 11 11 H 1.48494 * 109.47097 * 329.99423 * 8 6 4 12 12 C 1.46496 * 119.99930 * 276.02437 * 3 2 1 13 13 H 1.08995 * 109.47631 * 6.51567 * 12 3 2 14 14 C 1.53006 * 109.47177 * 126.51873 * 12 3 2 15 15 C 1.50705 * 109.47220 * 246.51672 * 12 3 2 16 16 C 1.38257 * 119.99918 * 295.10413 * 15 12 3 17 17 C 1.38207 * 120.00118 * 179.97438 * 16 15 12 18 18 C 1.38254 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.38211 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00086 * 180.02562 * 19 18 17 21 21 C 1.38211 * 119.99994 * 114.82320 * 15 12 3 22 22 H 1.09001 * 109.47424 * 299.99691 * 1 2 3 23 23 H 1.08992 * 109.47612 * 59.99941 * 1 2 3 24 24 H 1.08999 * 109.46821 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47088 * 120.00018 * 2 1 3 26 26 H 1.08996 * 109.47003 * 240.00161 * 2 1 3 27 27 H 0.97005 * 119.99421 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46552 * 299.99716 * 14 12 3 29 29 H 1.08997 * 109.46840 * 59.99843 * 14 12 3 30 30 H 1.09001 * 109.47078 * 180.02562 * 14 12 3 31 31 H 1.08003 * 120.00048 * 359.97438 * 16 15 12 32 32 H 1.08001 * 120.00409 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.00162 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.46739 * 90.00800 * 20 19 18 35 35 H 1.09006 * 109.46876 * 209.99845 * 20 19 18 36 36 H 1.08999 * 109.47159 * 330.00570 * 20 19 18 37 37 H 1.07994 * 120.00030 * 0.02562 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3638 1.9853 1.1794 5 1 2.7775 2.9829 1.1742 6 6 2.1825 1.3153 2.3815 7 7 1.0742 0.6390 2.5973 8 14 3.5115 1.3736 3.6930 9 1 3.2722 2.5334 4.5890 10 1 3.4784 0.1194 4.4873 11 1 4.8403 1.5145 3.0452 12 6 2.1368 2.1162 -1.2617 13 1 1.7117 1.5214 -2.0701 14 6 1.3813 3.4423 -1.1525 15 6 3.5908 2.3888 -1.5496 16 6 4.3185 3.2137 -0.7121 17 6 5.6520 3.4633 -0.9758 18 6 6.2582 2.8884 -2.0774 19 6 5.5308 2.0637 -2.9146 20 6 6.1917 1.4366 -4.1151 21 6 4.1983 1.8094 -2.6476 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.9474 0.1712 3.4375 28 1 0.3297 3.2451 -0.9443 29 1 1.8065 4.0371 -0.3441 30 1 1.4692 3.9889 -2.0914 31 1 3.8449 3.6632 0.1482 32 1 6.2207 4.1074 -0.3214 33 1 7.3004 3.0830 -2.2833 34 1 6.6158 0.4726 -3.8341 35 1 5.4523 1.2924 -4.9029 36 1 6.9849 2.0911 -4.4764 37 1 3.6309 1.1617 -3.2994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298305382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:15 Heat of formation + Delta-G solvation = 31.637368 kcal Electronic energy + Delta-G solvation = -16809.940788 eV Core-core repulsion = 14359.284870 eV Total energy + Delta-G solvation = -2450.655918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42740 -38.01615 -34.62775 -33.22154 -32.48837 -30.74972 -29.51161 -27.58950 -26.21077 -24.05112 -22.78898 -22.70921 -20.57408 -18.58975 -17.03810 -16.86877 -16.32161 -15.91824 -15.39512 -15.17713 -14.52333 -14.42799 -14.11808 -13.90848 -13.72034 -13.54360 -12.98131 -12.93168 -12.84717 -12.65521 -12.51642 -12.43439 -12.25917 -12.03214 -11.87273 -11.47455 -11.24134 -11.20510 -10.18155 -9.54587 -9.28949 -8.89428 -7.93636 -4.93821 0.65301 0.66373 1.41356 1.50501 1.58770 2.56523 2.99754 3.19449 3.68593 4.03157 4.13328 4.20949 4.41442 4.47230 4.61454 4.63171 4.73019 4.76462 4.86585 4.91020 4.94369 5.01640 5.09832 5.11381 5.20695 5.25401 5.36925 5.41227 5.49667 5.62074 5.71662 5.82390 5.84812 6.00391 6.11551 6.30486 6.35867 7.20996 7.97202 8.40248 9.13215 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.009406 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.178815 B = 2976.033880 C = 3562.108260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.166 3.834 3 N -0.596 5.596 4 C -0.251 4.251 5 H 0.080 0.920 6 C -0.029 4.029 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.292 1.292 10 H -0.298 1.298 11 H -0.286 1.286 12 C 0.203 3.797 13 H 0.070 0.930 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.100 4.100 20 C -0.105 4.105 21 C -0.131 4.131 22 H 0.058 0.942 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.247 0.753 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 2.400 -12.226 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 N -0.316 5.316 4 C -0.380 4.380 5 H 0.098 0.902 6 C -0.226 4.226 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.219 1.219 10 H -0.225 1.225 11 H -0.212 1.212 12 C 0.097 3.903 13 H 0.088 0.912 14 C -0.198 4.198 15 C -0.086 4.086 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.100 4.100 20 C -0.162 4.162 21 C -0.149 4.149 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.800 2.290 -12.102 14.069 hybrid contribution 0.357 -0.079 1.525 1.568 sum 7.157 2.211 -10.577 12.961 Atomic orbital electron populations 1.22102 0.98399 0.99182 1.00634 1.20593 0.93068 0.84811 0.97446 1.44429 1.75224 1.10320 1.01674 1.19237 1.33809 1.00640 0.84292 0.90232 1.24918 0.98063 1.01800 0.97818 1.70484 1.21369 1.36992 1.24264 0.86295 0.84102 0.76339 0.80654 1.21931 1.22468 1.21204 1.19393 0.89988 0.92975 0.87971 0.91151 1.22048 0.99482 0.97546 1.00758 1.20690 0.97939 0.95555 0.94383 1.21265 0.94947 0.99029 0.98683 1.21348 0.94809 1.00817 0.98259 1.21199 1.00338 0.98667 0.95274 1.20208 0.93778 0.97905 0.98095 1.20771 1.00731 1.00597 0.94093 1.21098 0.95221 1.00735 0.97885 0.92333 0.94998 0.94313 0.94155 0.95191 0.94396 0.93907 0.93882 0.91650 0.87380 0.85453 0.84261 0.91001 0.90827 0.90275 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 9.90 71.98 0.71 -5.67 16 2 C 0.17 7.81 5.55 86.38 0.48 8.29 16 3 N -0.60 -28.41 2.46 -682.20 -1.68 -30.09 16 4 C -0.25 -13.26 7.92 84.03 0.67 -12.60 16 5 H 0.08 4.17 4.70 -2.91 -0.01 4.16 16 6 C -0.03 -1.59 4.40 84.86 0.37 -1.22 16 7 N -0.89 -50.31 9.83 21.65 0.21 -50.10 16 8 Si 0.90 44.53 29.69 68.60 2.04 46.57 16 9 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 10 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 12 C 0.20 8.07 3.06 44.25 0.14 8.21 16 13 H 0.07 2.58 7.67 -2.39 -0.02 2.56 16 14 C -0.14 -5.22 8.81 71.98 0.63 -4.58 16 15 C -0.08 -3.13 4.98 -19.86 -0.10 -3.23 16 16 C -0.12 -4.63 8.28 22.27 0.18 -4.44 16 17 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 18 C -0.14 -3.87 9.70 22.27 0.22 -3.66 16 19 C -0.10 -2.80 5.88 -19.86 -0.12 -2.91 16 20 C -0.11 -2.07 10.01 71.24 0.71 -1.35 16 21 C -0.13 -4.20 9.33 22.27 0.21 -3.99 16 22 H 0.06 3.02 6.39 -2.39 -0.02 3.00 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 2.14 6.13 -2.39 -0.01 2.12 16 26 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 27 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.72 6.11 -2.39 -0.01 1.71 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 4.52 4.84 -2.91 -0.01 4.50 16 32 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 36 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 37 H 0.13 3.58 7.95 -2.91 -0.02 3.55 16 Total: -1.00 -59.64 294.37 5.93 -53.70 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.03 Total: 11.22 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.33 Total: -31.31 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.47 Total: -80.18 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.04 Total: 46.57 kcal Total: -59.64 5.93 -53.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298305382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.339 kcal (2) G-P(sol) polarization free energy of solvation -59.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds