Wall clock time and date at job start Sun Mar 29 2020 22:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99993 * 2 1 4 4 H 1.48504 * 109.46808 * 274.34378 * 3 2 1 5 5 H 1.48494 * 109.46994 * 34.34347 * 3 2 1 6 6 H 1.48502 * 109.46978 * 154.34403 * 3 2 1 7 7 C 1.38813 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 162.60770 * 7 2 1 9 9 N 1.36940 * 120.00112 * 342.60107 * 7 2 1 10 10 C 1.46928 * 120.62848 * 332.31049 * 9 7 2 11 11 C 1.53194 * 108.77270 * 233.58005 * 10 9 7 12 12 C 1.53036 * 109.31497 * 305.37059 * 11 10 9 13 13 C 1.53041 * 109.54195 * 61.36248 * 12 11 10 14 14 H 1.09005 * 109.49313 * 58.61882 * 13 12 11 15 15 S 1.81397 * 109.50033 * 178.68148 * 13 12 11 16 16 N 1.65600 * 104.45172 * 179.97438 * 15 13 12 17 17 O 1.42098 * 110.54447 * 291.63049 * 15 13 12 18 18 O 1.42111 * 110.53983 * 68.37487 * 15 13 12 19 19 C 1.46919 * 120.62887 * 152.28303 * 9 7 2 20 20 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.58930 * 353.37408 * 10 9 7 22 22 H 1.09003 * 109.58320 * 113.79991 * 10 9 7 23 23 H 1.09001 * 109.49849 * 185.41405 * 11 10 9 24 24 H 1.08999 * 109.49332 * 65.32331 * 11 10 9 25 25 H 1.09000 * 109.46073 * 301.34273 * 12 11 10 26 26 H 1.09006 * 109.45877 * 181.38760 * 12 11 10 27 27 H 0.96989 * 119.99924 * 149.99969 * 16 15 13 28 28 H 0.97005 * 119.99787 * 330.00415 * 16 15 13 29 29 H 1.09004 * 109.58814 * 6.62947 * 19 9 7 30 30 H 1.09003 * 109.70814 * 246.27288 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4059 2.0994 -1.3961 5 1 1.4966 2.6244 0.7898 6 1 3.5907 1.4154 0.6062 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2237 -0.2790 9 7 1.3725 -2.3608 0.3557 10 6 0.2287 -2.3334 1.2775 11 6 0.5024 -3.3029 2.4316 12 6 0.8196 -4.6885 1.8644 13 6 2.0746 -4.6095 0.9921 14 1 2.9091 -4.2398 1.5880 15 16 2.4719 -6.2595 0.3519 16 7 3.8326 -6.0310 -0.5637 17 8 2.8967 -7.1139 1.4049 18 8 1.4881 -6.6820 -0.5826 19 6 1.8187 -3.6548 -0.1783 20 1 -0.4850 0.8401 -0.0004 21 1 0.0999 -1.3249 1.6702 22 1 -0.6739 -2.6401 0.7490 23 1 -0.3779 -3.3645 3.0715 24 1 1.3515 -2.9450 3.0138 25 1 -0.0201 -5.0352 1.2620 26 1 0.9905 -5.3861 2.6844 27 1 4.4809 -6.7465 -0.6560 28 1 3.9814 -5.1814 -1.0077 29 1 2.7390 -3.5180 -0.7462 30 1 1.0475 -4.0704 -0.8269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306509488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:08 Heat of formation + Delta-G solvation = -60.965898 kcal Electronic energy + Delta-G solvation = -15460.712297 eV Core-core repulsion = 12804.392652 eV Total energy + Delta-G solvation = -2656.319646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.68906 -36.74710 -35.67799 -33.35386 -33.08885 -30.67273 -30.15096 -25.47189 -22.87656 -22.33347 -19.72881 -18.98101 -17.65991 -17.06357 -16.61614 -15.62351 -15.24809 -14.86133 -14.20777 -13.72215 -13.46954 -12.90336 -12.74513 -12.28853 -11.96963 -11.85627 -11.71522 -11.40175 -11.11294 -10.92797 -10.61470 -10.52942 -10.38710 -10.28879 -10.11842 -9.75625 -9.48542 -8.61100 -6.86420 -5.93225 -3.37576 0.55102 3.09092 3.28939 3.36871 3.38457 3.90117 4.36226 4.60852 4.82708 5.10459 5.29118 5.41734 5.47567 5.70771 5.91308 5.95873 6.14070 6.20707 6.43723 6.49847 6.51814 6.65390 7.19065 7.24198 7.52809 7.65437 8.27451 9.04103 9.66268 10.22479 11.14986 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.007805 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.368206 B = 3586.781617 C = 3906.698786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.579 5.579 10 C 0.165 3.835 11 C -0.134 4.134 12 C -0.097 4.097 13 C -0.587 4.587 14 H 0.136 0.864 15 S 2.607 3.393 16 N -1.251 6.251 17 O -0.979 6.979 18 O -0.967 6.967 19 C 0.161 3.839 20 H 0.256 0.744 21 H 0.092 0.908 22 H 0.024 0.976 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.414 0.586 28 H 0.415 0.585 29 H 0.063 0.937 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -7.903 1.819 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.301 5.301 10 C 0.039 3.961 11 C -0.174 4.174 12 C -0.136 4.136 13 C -0.702 4.702 14 H 0.154 0.846 15 S 2.701 3.299 16 N -0.923 5.923 17 O -0.969 6.969 18 O -0.956 6.956 19 C 0.032 3.968 20 H 0.066 0.934 21 H 0.110 0.890 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.243 0.757 28 H 0.242 0.758 29 H 0.082 0.918 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.267 -8.640 2.047 9.851 hybrid contribution 0.979 1.588 -0.126 1.870 sum 5.246 -7.051 1.921 8.996 Atomic orbital electron populations 1.70044 1.05342 1.25840 1.52826 1.25071 0.95318 0.98593 1.00318 0.86250 0.79192 0.83378 0.77727 1.21289 1.21427 1.20342 1.19176 0.92854 0.84632 1.42705 0.91380 1.43951 1.35810 1.00491 1.49851 1.20906 0.88529 0.98732 0.87910 1.22111 1.00698 0.94603 0.99991 1.21227 0.94252 1.00348 0.97811 1.30875 1.08228 1.19803 1.11274 0.84625 1.05037 0.73534 0.76964 0.74411 1.53218 1.43447 1.25807 1.69868 1.93549 1.81096 1.64374 1.57843 1.93580 1.60343 1.80018 1.61637 1.20655 0.99001 0.87655 0.89531 0.93374 0.88988 0.95793 0.92280 0.92191 0.90930 0.91866 0.75715 0.75755 0.91838 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.19 55.49 0.62 -24.40 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 3 Si 0.91 20.72 29.59 -169.99 -5.03 15.69 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.26 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.58 -13.68 2.99 -172.32 -0.52 -14.19 16 10 C 0.16 3.75 5.31 -3.71 -0.02 3.73 16 11 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 12 C -0.10 -1.58 5.17 -26.69 -0.14 -1.72 16 13 C -0.59 -9.34 3.00 -26.61 -0.08 -9.42 16 14 H 0.14 2.00 8.14 -51.92 -0.42 1.58 16 15 S 2.61 38.38 5.41 -107.50 -0.58 37.79 16 16 N -1.25 -13.82 9.34 60.35 0.56 -13.25 16 17 O -0.98 -16.71 18.10 -57.54 -1.04 -17.75 16 18 O -0.97 -17.47 17.85 -57.54 -1.03 -18.50 16 19 C 0.16 3.06 5.61 -3.71 -0.02 3.04 16 20 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 21 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.41 3.74 8.96 -34.46 -0.31 3.43 16 28 H 0.42 3.97 7.72 -34.47 -0.27 3.70 16 29 H 0.06 1.06 6.86 -51.93 -0.36 0.70 16 30 H 0.04 0.84 7.95 -51.93 -0.41 0.43 16 LS Contribution 258.05 15.07 3.89 3.89 Total: -1.00 -33.07 258.05 -7.52 -40.58 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.74 Total: 3.98 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.65 Total: -13.84 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.67 Total: -51.85 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -2.07 Total: -36.25 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: 38.38 SS G_CDS: -0.58 Total: 37.79 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.07 -7.52 -40.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306509488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.385 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds