Wall clock time and date at job start Sun Mar 29 2020 22:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99993 * 2 1 4 4 H 1.48504 * 109.46808 * 274.34378 * 3 2 1 5 5 H 1.48494 * 109.46994 * 34.34347 * 3 2 1 6 6 H 1.48502 * 109.46978 * 154.34403 * 3 2 1 7 7 C 1.38813 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 162.60770 * 7 2 1 9 9 N 1.36940 * 120.00112 * 342.60107 * 7 2 1 10 10 C 1.46928 * 120.62848 * 332.31049 * 9 7 2 11 11 C 1.53194 * 108.77270 * 233.58005 * 10 9 7 12 12 C 1.53036 * 109.31497 * 305.37059 * 11 10 9 13 13 C 1.53041 * 109.54195 * 61.36248 * 12 11 10 14 14 H 1.09005 * 109.49313 * 58.61882 * 13 12 11 15 15 S 1.81397 * 109.50033 * 178.68148 * 13 12 11 16 16 N 1.65600 * 104.45172 * 179.97438 * 15 13 12 17 17 O 1.42098 * 110.54447 * 291.63049 * 15 13 12 18 18 O 1.42111 * 110.53983 * 68.37487 * 15 13 12 19 19 C 1.46919 * 120.62887 * 152.28303 * 9 7 2 20 20 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.58930 * 353.37408 * 10 9 7 22 22 H 1.09003 * 109.58320 * 113.79991 * 10 9 7 23 23 H 1.09001 * 109.49849 * 185.41405 * 11 10 9 24 24 H 1.08999 * 109.49332 * 65.32331 * 11 10 9 25 25 H 1.09000 * 109.46073 * 301.34273 * 12 11 10 26 26 H 1.09006 * 109.45877 * 181.38760 * 12 11 10 27 27 H 0.96989 * 119.99924 * 149.99969 * 16 15 13 28 28 H 0.97005 * 119.99787 * 330.00415 * 16 15 13 29 29 H 1.09004 * 109.58814 * 6.62947 * 19 9 7 30 30 H 1.09003 * 109.70814 * 246.27288 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4059 2.0994 -1.3961 5 1 1.4966 2.6244 0.7898 6 1 3.5907 1.4154 0.6062 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2237 -0.2790 9 7 1.3725 -2.3608 0.3557 10 6 0.2287 -2.3334 1.2775 11 6 0.5024 -3.3029 2.4316 12 6 0.8196 -4.6885 1.8644 13 6 2.0746 -4.6095 0.9921 14 1 2.9091 -4.2398 1.5880 15 16 2.4719 -6.2595 0.3519 16 7 3.8326 -6.0310 -0.5637 17 8 2.8967 -7.1139 1.4049 18 8 1.4881 -6.6820 -0.5826 19 6 1.8187 -3.6548 -0.1783 20 1 -0.4850 0.8401 -0.0004 21 1 0.0999 -1.3249 1.6702 22 1 -0.6739 -2.6401 0.7490 23 1 -0.3779 -3.3645 3.0715 24 1 1.3515 -2.9450 3.0138 25 1 -0.0201 -5.0352 1.2620 26 1 0.9905 -5.3861 2.6844 27 1 4.4809 -6.7465 -0.6560 28 1 3.9814 -5.1814 -1.0077 29 1 2.7390 -3.5180 -0.7462 30 1 1.0475 -4.0704 -0.8269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306509488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:08 Heat of formation + Delta-G solvation = -87.610025 kcal Electronic energy + Delta-G solvation = -15461.867673 eV Core-core repulsion = 12804.392652 eV Total energy + Delta-G solvation = -2657.475022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25267 -38.06170 -36.99346 -35.11090 -34.10542 -32.35040 -31.78113 -27.29093 -24.41427 -23.95824 -21.25111 -20.21614 -19.05857 -18.21319 -18.16743 -16.97697 -16.79774 -16.34710 -15.77840 -15.36317 -15.01077 -14.45963 -14.39241 -13.77844 -13.23712 -13.16909 -13.10727 -13.02343 -12.85321 -12.55448 -12.35315 -12.10229 -11.97302 -11.80037 -11.41423 -11.31437 -10.95308 -10.56515 -8.75484 -7.90138 -5.36678 -0.67675 1.47790 1.50310 1.59350 1.98505 2.50409 2.69531 3.22644 3.36452 3.50223 3.67012 3.94199 4.08930 4.33937 4.51423 4.60538 4.80834 4.87559 5.02791 5.09520 5.11871 5.31654 5.49685 5.63652 5.72980 6.34404 6.39988 7.10035 7.78882 8.31799 9.16576 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.007805 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.368206 B = 3586.781617 C = 3906.698786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.268 4.268 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.166 3.834 11 C -0.124 4.124 12 C -0.105 4.105 13 C -0.583 4.583 14 H 0.153 0.847 15 S 2.643 3.357 16 N -1.237 6.237 17 O -0.996 6.996 18 O -0.999 6.999 19 C 0.152 3.848 20 H 0.250 0.750 21 H 0.059 0.941 22 H -0.001 1.001 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.427 0.573 28 H 0.425 0.575 29 H 0.087 0.913 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -8.849 2.231 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.398 4.398 8 H 0.097 0.903 9 N -0.322 5.322 10 C 0.040 3.960 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.696 4.696 14 H 0.171 0.829 15 S 2.735 3.265 16 N -0.914 5.914 17 O -0.985 6.985 18 O -0.988 6.988 19 C 0.024 3.976 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.017 0.983 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.259 0.741 28 H 0.254 0.746 29 H 0.105 0.895 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.112 -9.611 2.458 11.652 hybrid contribution 0.440 1.812 -0.298 1.889 sum 6.552 -7.798 2.160 10.412 Atomic orbital electron populations 1.70203 1.06821 1.25983 1.54910 1.25837 0.95998 1.01685 1.01049 0.85253 0.78278 0.79479 0.77334 1.21338 1.22241 1.19072 1.19612 0.93439 0.85606 1.41145 0.90328 1.44192 1.35839 1.01588 1.50603 1.20747 0.87807 0.98217 0.89195 1.21942 1.01764 0.94415 0.98239 1.21323 0.94479 0.99706 0.98907 1.30764 1.08820 1.19992 1.10057 0.82916 1.03786 0.73355 0.75603 0.73719 1.52832 1.42658 1.26862 1.69054 1.93530 1.81438 1.64704 1.58837 1.93553 1.62260 1.80417 1.62581 1.20823 0.99577 0.86281 0.90884 0.94054 0.92251 0.98326 0.90258 0.91928 0.91185 0.88803 0.74128 0.74554 0.89500 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 11.19 21.65 0.24 -53.35 16 2 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 3 Si 0.97 42.83 29.59 68.60 2.03 44.86 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.27 -13.75 9.58 84.03 0.81 -12.95 16 8 H 0.08 3.77 7.89 -2.91 -0.02 3.75 16 9 N -0.60 -28.18 2.99 -699.09 -2.09 -30.27 16 10 C 0.17 7.69 5.31 86.36 0.46 8.14 16 11 C -0.12 -4.31 6.08 30.67 0.19 -4.13 16 12 C -0.11 -3.20 5.17 30.62 0.16 -3.05 16 13 C -0.58 -17.12 3.00 30.67 0.09 -17.02 16 14 H 0.15 3.99 8.14 -2.39 -0.02 3.98 16 15 S 2.64 70.83 5.41 -56.49 -0.31 70.52 16 16 N -1.24 -23.35 9.34 37.02 0.35 -23.00 16 17 O -1.00 -30.95 18.10 -127.65 -2.31 -33.26 16 18 O -1.00 -34.30 17.85 -127.65 -2.28 -36.58 16 19 C 0.15 5.59 5.61 86.36 0.48 6.07 16 20 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 21 H 0.06 3.12 6.04 -2.39 -0.01 3.10 16 22 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.43 6.26 8.96 -96.76 -0.87 5.39 16 28 H 0.42 6.69 7.72 -96.74 -0.75 5.94 16 29 H 0.09 2.70 6.86 -2.39 -0.02 2.68 16 30 H 0.03 1.20 7.95 -2.39 -0.02 1.18 16 Total: -1.00 -70.79 258.05 -2.22 -73.01 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.45 Total: 13.25 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 2.60 Total: -25.18 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -1.51 Total: -106.62 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -4.59 Total: -69.84 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 70.83 SS G_CDS: -0.31 Total: 70.52 kcal Total: -70.79 -2.22 -73.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306509488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.596 kcal (2) G-P(sol) polarization free energy of solvation -70.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds