Wall clock time and date at job start Sun Mar 29 2020 21:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.52999 * 109.46788 * 185.00156 * 3 2 1 5 5 C 1.53002 * 109.47014 * 175.47260 * 4 3 2 6 6 N 1.46497 * 109.47195 * 65.00264 * 3 2 1 7 7 C 1.39688 * 120.00044 * 243.22070 * 6 3 2 8 8 C 1.39340 * 119.94769 * 353.17154 * 7 6 3 9 9 C 1.38473 * 120.42037 * 179.72215 * 8 7 6 10 10 C 1.37690 * 120.32811 * 0.54915 * 9 8 7 11 11 C 1.40749 * 119.88827 * 359.72695 * 10 9 8 12 12 C 1.41412 * 120.20614 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00047 * 27.61541 * 12 11 10 14 14 C 1.39931 * 119.99921 * 207.61708 * 12 11 10 15 15 N 1.30822 * 120.00243 * 12.83206 * 14 12 11 16 16 Si 1.86804 * 119.99742 * 192.83238 * 14 12 11 17 17 H 1.48501 * 109.47303 * 60.00327 * 16 14 12 18 18 H 1.48503 * 109.46977 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47096 * 300.00100 * 16 14 12 20 20 C 1.38272 * 119.95207 * 173.44214 * 7 6 3 21 21 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46907 * 299.99630 * 1 2 3 23 23 H 1.08999 * 109.47291 * 59.99748 * 1 2 3 24 24 H 1.08995 * 109.47066 * 239.99797 * 2 1 3 25 25 H 1.09003 * 109.46819 * 120.00136 * 2 1 3 26 26 H 1.09000 * 109.47073 * 305.00048 * 3 2 1 27 27 H 1.09004 * 109.47330 * 295.46944 * 4 3 2 28 28 H 1.08994 * 109.47829 * 55.47248 * 4 3 2 29 29 H 1.08999 * 109.47263 * 185.14480 * 5 4 3 30 30 H 1.09004 * 109.47048 * 305.14629 * 5 4 3 31 31 H 1.09001 * 109.47094 * 65.14373 * 5 4 3 32 32 H 0.97002 * 120.00104 * 63.22109 * 6 3 2 33 33 H 1.08002 * 119.78689 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.83809 * 180.27905 * 9 8 7 35 35 H 1.07994 * 120.05769 * 179.74912 * 10 9 8 36 36 H 0.97006 * 120.00200 * 179.97438 * 15 14 12 37 37 H 1.07997 * 120.16163 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4442 -0.1258 5 6 4.0655 2.8856 -0.2393 6 7 1.6525 2.0975 1.2518 7 6 0.7886 3.1949 1.2276 8 6 0.4091 3.7546 0.0093 9 6 -0.4514 4.8390 -0.0264 10 6 -0.9327 5.3834 1.1432 11 6 -0.5535 4.8322 2.3815 12 6 -1.0442 5.3857 3.5867 13 1 -1.9975 5.8930 3.5992 14 6 -0.2946 5.2760 4.7632 15 7 0.9552 4.8930 4.7092 16 14 -1.0784 5.6766 6.4108 17 1 -2.2378 4.7772 6.6392 18 1 -0.0807 5.4833 7.4937 19 1 -1.5396 7.0882 6.4095 20 6 0.3158 3.7276 2.4127 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6054 1.9815 -0.8418 27 1 4.0027 0.9760 0.7558 28 1 3.8567 0.8871 -1.0159 29 1 5.1404 2.8836 -0.4204 30 1 3.5585 3.3822 -1.0667 31 1 3.8543 3.4177 0.6882 32 1 1.9958 1.7691 2.0975 33 1 0.7852 3.3375 -0.9132 34 1 -0.7430 5.2626 -0.9761 35 1 -1.6003 6.2316 1.1104 36 1 1.4749 4.8174 5.5248 37 1 0.6125 3.2971 3.3577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313425154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:07 Heat of formation + Delta-G solvation = -14.223840 kcal Electronic energy + Delta-G solvation = -16442.060152 eV Core-core repulsion = 13989.415543 eV Total energy + Delta-G solvation = -2452.644609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94178 -37.94711 -35.40540 -33.52082 -32.88547 -31.31081 -29.22330 -27.12572 -26.72045 -23.20838 -22.80223 -22.09385 -20.97468 -19.08686 -17.60873 -16.78492 -16.40335 -16.16565 -15.61661 -15.09131 -14.79195 -14.58610 -14.09887 -13.98314 -13.68706 -13.49898 -13.19814 -12.96805 -12.75485 -12.58290 -12.45531 -12.19790 -12.00236 -11.77330 -11.70494 -11.53224 -11.44869 -11.11645 -11.01440 -10.38393 -9.17841 -8.56238 -7.79726 -6.31284 1.12299 1.37746 1.38208 1.49169 1.60035 2.24098 2.85515 2.93297 3.82216 3.88435 4.18219 4.24557 4.40966 4.54276 4.56419 4.63138 4.69101 4.92832 4.97451 5.03306 5.09578 5.12890 5.14710 5.22379 5.24230 5.30769 5.36286 5.47397 5.49151 5.54095 5.67077 6.01240 6.15075 6.25587 6.33284 6.63631 6.99596 7.09699 7.14851 7.32195 8.43406 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.006938 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.295782 B = 4034.916045 C = 4194.714906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.145 3.855 4 C -0.125 4.125 5 C -0.144 4.144 6 N -0.742 5.742 7 C 0.232 3.768 8 C -0.297 4.297 9 C -0.066 4.066 10 C -0.287 4.287 11 C 0.107 3.893 12 C -0.507 4.507 13 H 0.069 0.931 14 C 0.035 3.965 15 N -0.828 5.828 16 Si 0.979 3.021 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.262 1.262 20 C -0.256 4.256 21 H 0.062 0.938 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.388 0.612 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.283 0.717 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 -8.461 -6.330 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.039 3.961 4 C -0.164 4.164 5 C -0.202 4.202 6 N -0.372 5.372 7 C 0.131 3.869 8 C -0.319 4.319 9 C -0.085 4.085 10 C -0.307 4.307 11 C 0.105 3.895 12 C -0.537 4.537 13 H 0.087 0.913 14 C -0.179 4.179 15 N -0.455 5.455 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.186 1.186 20 C -0.280 4.280 21 H 0.081 0.919 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.221 0.779 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.553 -8.550 -6.397 11.608 hybrid contribution -0.287 0.476 1.278 1.394 sum 4.266 -8.075 -5.118 10.469 Atomic orbital electron populations 1.21657 0.96565 1.01104 1.00929 1.21907 0.95625 0.96074 1.02881 1.21171 0.94443 0.92967 0.87483 1.21881 0.94676 0.96961 1.02859 1.21651 1.00740 0.97058 1.00722 1.44534 1.52102 1.32746 1.07833 1.17671 0.88982 0.86939 0.93323 1.20268 1.11553 1.04804 0.95285 1.20646 0.95863 0.95274 0.96673 1.21017 1.11517 1.04898 0.93298 1.17719 0.89723 0.89375 0.92729 1.19761 1.05610 1.34298 0.94050 0.91329 1.26669 0.94495 0.92569 1.04152 1.69906 1.08032 1.36407 1.31150 0.85309 0.78883 0.79682 0.76088 1.18683 1.19205 1.18611 1.20682 1.09852 1.02006 0.95460 0.91865 0.95169 0.93335 0.89153 0.91893 0.90238 0.91816 0.89041 0.91759 0.93467 0.95289 0.77872 0.86762 0.86653 0.89546 0.90702 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.80 71.98 0.71 -3.21 16 2 C -0.13 -2.95 5.61 30.59 0.17 -2.78 16 3 C 0.14 4.04 2.28 44.99 0.10 4.14 16 4 C -0.13 -2.93 5.61 30.59 0.17 -2.76 16 5 C -0.14 -3.93 9.73 71.98 0.70 -3.23 16 6 N -0.74 -26.97 4.06 -319.12 -1.30 -28.27 16 7 C 0.23 10.66 6.63 38.16 0.25 10.91 16 8 C -0.30 -13.02 9.31 22.59 0.21 -12.81 16 9 C -0.07 -3.02 10.01 22.20 0.22 -2.80 16 10 C -0.29 -15.03 9.79 22.75 0.22 -14.81 16 11 C 0.11 6.14 5.55 -21.31 -0.12 6.02 16 12 C -0.51 -28.97 9.06 23.46 0.21 -28.76 16 13 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 14 C 0.03 1.84 5.22 85.25 0.45 2.28 16 15 N -0.83 -45.09 10.88 21.82 0.24 -44.85 16 16 Si 0.98 40.20 29.58 68.60 2.03 42.22 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 20 C -0.26 -13.84 8.51 22.85 0.19 -13.64 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.03 1.00 7.75 -2.38 -0.02 0.98 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 2.39 5.30 -2.39 -0.01 2.37 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 32 H 0.39 14.05 8.84 -92.71 -0.82 13.23 16 33 H 0.11 4.36 5.74 -2.91 -0.02 4.34 16 34 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.28 14.00 8.30 -92.70 -0.77 13.23 16 37 H 0.10 5.56 6.21 -2.91 -0.02 5.54 16 Total: -1.00 -61.46 302.13 4.69 -56.77 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.22 Total: 35.57 kcal Atomic # 6 Polarization: -64.94 SS G_CDS: 3.49 Total: -61.45 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.06 Total: -73.12 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -61.46 4.69 -56.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313425154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.546 kcal (2) G-P(sol) polarization free energy of solvation -61.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds