Wall clock time and date at job start Sun Mar 29 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33578 * 125.73688 * 2 1 4 4 C 1.34890 * 109.82711 * 180.17583 * 3 2 1 5 5 C 1.43205 * 125.75744 * 179.88577 * 4 3 2 6 6 N 4.69745 * 150.58245 * 359.74476 * 2 1 3 7 7 C 1.36102 * 108.48197 * 359.61961 * 4 3 2 8 8 C 1.36744 * 125.72901 * 179.76253 * 2 1 3 9 9 C 1.47479 * 126.70637 * 359.93825 * 8 2 1 10 10 O 1.21597 * 119.99758 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00083 * 180.02562 * 9 8 2 12 12 C 1.46497 * 120.00055 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47424 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00060 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00519 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99898 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00547 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47325 * 120.00009 * 17 15 13 20 20 H 1.48499 * 109.47421 * 240.00184 * 17 15 13 21 21 H 1.08998 * 109.46956 * 270.23825 * 1 2 3 22 22 H 1.09002 * 109.46757 * 30.23825 * 1 2 3 23 23 H 1.09006 * 109.47248 * 150.24040 * 1 2 3 24 24 H 1.07994 * 126.71816 * 180.22825 * 7 4 3 25 25 H 0.97008 * 120.00081 * 0.02562 * 11 9 8 26 26 H 1.09002 * 109.47197 * 300.00603 * 12 11 9 27 27 H 1.09001 * 109.46659 * 60.00534 * 12 11 9 28 28 H 0.97000 * 120.00157 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7145 -0.0039 5 6 4.7078 1.6027 -0.0074 6 7 5.5988 2.3072 -0.0103 7 6 3.6455 -0.6451 0.0021 8 6 2.3055 -1.1101 0.0046 9 6 1.8605 -2.5161 0.0117 10 8 0.6730 -2.7779 0.0135 11 7 2.7699 -3.5107 0.0162 12 6 2.3278 -4.9074 0.0238 13 6 3.5307 -5.8151 0.0282 14 1 4.5251 -5.3938 0.0260 15 6 3.3618 -7.1834 0.0351 16 7 2.1509 -7.6966 0.0372 17 14 4.8529 -8.3086 0.0413 18 1 6.0914 -7.4892 0.0382 19 1 4.8260 -9.1595 1.2580 20 1 4.8269 -9.1717 -1.1669 21 1 -0.3633 0.0043 1.0276 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3634 -0.8922 -0.5101 24 1 4.5393 -1.2513 0.0045 25 1 3.7172 -3.3019 0.0151 26 1 1.7288 -5.0941 0.9152 27 1 1.7276 -5.1033 -0.8648 28 1 2.0320 -8.6593 0.0417 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335685540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:01 Heat of formation + Delta-G solvation = -19.442178 kcal Electronic energy + Delta-G solvation = -15169.238437 eV Core-core repulsion = 12379.275444 eV Total energy + Delta-G solvation = -2789.962993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.03263 -40.26755 -37.86918 -36.16202 -34.73996 -34.13174 -33.08820 -29.69990 -28.41733 -25.46210 -23.99494 -22.75963 -21.66238 -20.52631 -18.49543 -17.78956 -17.37227 -16.98139 -16.43237 -15.95759 -15.90788 -15.16953 -14.73285 -14.66602 -14.43989 -14.07608 -13.96739 -13.90902 -13.73221 -13.65095 -12.86273 -12.81943 -12.74032 -12.19657 -11.42228 -11.21008 -10.92687 -10.78575 -9.88866 -9.59939 -8.26314 -6.41600 -0.18846 0.49022 0.74705 1.46475 1.46577 1.59807 1.73723 2.05718 2.31487 2.39229 2.52120 2.89405 3.09479 3.60181 3.64456 4.04239 4.36704 4.53606 4.65579 4.69473 4.96240 5.16390 5.22973 5.30380 5.50987 5.65886 5.73682 5.88430 6.10914 6.68762 6.90207 7.26220 7.45452 8.85826 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.005517 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.387493 B = 5073.977850 C = 5975.918365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.125 3.875 3 O -0.146 6.146 4 C 0.023 3.977 5 C 0.318 3.682 6 N -0.410 5.410 7 C -0.069 4.069 8 C -0.255 4.255 9 C 0.572 3.428 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.267 3.733 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.980 3.020 18 H -0.254 1.254 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.109 0.891 22 H 0.112 0.888 23 H 0.097 0.903 24 H 0.193 0.807 25 H 0.407 0.593 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 15.019 -0.059 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 O -0.039 6.039 4 C -0.028 4.028 5 C 0.003 3.997 6 N -0.088 5.088 7 C -0.092 4.092 8 C -0.260 4.260 9 C 0.360 3.640 10 O -0.468 6.468 11 N -0.348 5.348 12 C 0.145 3.855 13 C -0.592 4.592 14 H 0.102 0.898 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.804 3.196 18 H -0.177 1.177 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.127 0.873 22 H 0.131 0.869 23 H 0.115 0.885 24 H 0.210 0.790 25 H 0.243 0.757 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.933 16.043 -0.061 16.159 hybrid contribution 0.464 -1.228 0.015 1.313 sum 2.396 14.815 -0.046 15.007 Atomic orbital electron populations 1.20863 0.81239 1.06135 1.05987 1.23509 0.95071 0.81781 0.92767 1.83959 1.14928 1.34285 1.70749 1.15961 0.79566 0.89460 1.17842 1.23296 0.91513 0.91966 0.92921 1.81365 1.10564 1.06499 1.10421 1.22218 0.98129 0.92166 0.96687 1.20053 0.94315 0.93504 1.18088 1.17632 0.85511 0.84562 0.76296 1.90704 1.17780 1.85051 1.53295 1.46015 1.09919 1.06595 1.72272 1.18599 0.95347 0.76923 0.94667 1.21651 0.93286 0.91689 1.52623 0.89843 1.25981 0.99399 0.99976 0.94008 1.70127 1.23490 1.13037 1.50100 0.85174 0.78737 0.78129 0.77573 1.17744 1.20622 1.20610 0.87327 0.86925 0.88470 0.78953 0.75679 0.98794 0.98783 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.87 71.24 0.70 -0.88 15 2 C 0.13 2.83 7.37 25.34 0.19 3.01 15 3 O -0.15 -2.99 10.62 -1.56 -0.02 -3.01 15 4 C 0.02 0.46 7.04 23.02 0.16 0.62 15 5 C 0.32 6.68 15.87 88.33 1.40 8.08 15 6 N -0.41 -10.00 18.54 19.00 0.35 -9.65 15 7 C -0.07 -1.45 10.28 22.66 0.23 -1.21 15 8 C -0.26 -6.90 6.13 -20.30 -0.12 -7.03 15 9 C 0.57 21.43 7.82 86.68 0.68 22.11 15 10 O -0.59 -25.93 14.77 -4.02 -0.06 -25.99 15 11 N -0.70 -27.87 5.54 -470.07 -2.60 -30.48 15 12 C 0.27 13.92 5.43 85.63 0.46 14.38 15 13 C -0.55 -28.99 9.28 25.60 0.24 -28.75 15 14 H 0.08 3.94 7.60 -2.91 -0.02 3.91 15 15 C 0.01 0.33 5.46 84.65 0.46 0.79 15 16 N -0.93 -54.35 13.29 21.45 0.28 -54.06 15 17 Si 0.98 41.24 29.54 68.60 2.03 43.27 15 18 H -0.25 -9.88 7.11 99.48 0.71 -9.17 15 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 21 H 0.11 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.11 1.32 8.14 -2.39 -0.02 1.31 15 23 H 0.10 2.32 6.44 -2.38 -0.02 2.30 15 24 H 0.19 3.03 7.58 -2.91 -0.02 3.01 15 25 H 0.41 13.30 7.35 -92.70 -0.68 12.62 15 26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 27 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -66.77 267.99 4.92 -61.85 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.53 Total: 6.95 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 4.40 Total: 11.12 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -1.97 Total: -94.19 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.08 Total: -29.00 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -66.77 4.92 -61.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335685540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.404 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds