Wall clock time and date at job start Sun Mar 29 2020 22:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48502 * 109.47041 * 240.00022 * 3 2 1 5 5 H 1.48497 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46551 * 120.00144 * 3 2 1 7 7 C 1.39047 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36872 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99688 * 180.02562 * 9 7 2 11 11 O 1.21580 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.47743 * 119.99799 * 180.02562 * 10 9 7 13 13 C 1.39779 * 120.08079 * 359.97438 * 12 10 9 14 14 C 1.38032 * 120.13951 * 180.02562 * 13 12 10 15 15 C 1.38115 * 120.30279 * 359.78734 * 14 13 12 16 16 C 1.39677 * 120.15735 * 0.46908 * 15 14 13 17 17 C 1.47869 * 120.07169 * 179.78648 * 16 15 14 18 18 N 1.34777 * 119.99621 * 359.72164 * 17 16 15 19 19 O 1.21553 * 120.00090 * 179.72464 * 17 16 15 20 20 C 1.39309 * 119.85973 * 359.51336 * 16 15 14 21 21 H 0.96996 * 120.00341 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00307 * 0.02562 * 9 7 2 23 23 H 1.07999 * 119.93077 * 0.02562 * 13 12 10 24 24 H 1.07999 * 119.85056 * 180.02562 * 14 13 12 25 25 H 1.07998 * 119.92405 * 180.23507 * 15 14 13 26 26 H 0.97001 * 120.00485 * 0.02562 * 18 17 16 27 27 H 0.97005 * 119.99790 * 179.72355 * 18 17 16 28 28 H 1.08008 * 120.15083 * 180.23017 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1014 1.6963 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2042 -0.0001 9 7 1.3245 -2.3895 -0.0005 10 6 1.9985 -3.5567 -0.0005 11 8 3.2143 -3.5567 -0.0001 12 6 1.2598 -4.8362 -0.0011 13 6 -0.1380 -4.8382 -0.0011 14 6 -0.8293 -6.0329 -0.0011 15 6 -0.1463 -7.2333 -0.0055 16 6 1.2504 -7.2460 -0.0002 17 6 1.9797 -8.5323 -0.0001 18 7 1.2967 -9.6942 0.0004 19 8 3.1952 -8.5418 -0.0005 20 6 1.9549 -6.0442 -0.0006 21 1 -0.4850 0.8400 0.0004 22 1 0.3546 -2.3896 -0.0005 23 1 -0.6782 -3.9030 -0.0011 24 1 -1.9093 -6.0290 -0.0015 25 1 -0.6934 -8.1645 -0.0094 26 1 0.3267 -9.6866 0.0003 27 1 1.7751 -10.5380 -0.0037 28 1 3.0350 -6.0485 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339922117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:39 Heat of formation + Delta-G solvation = -54.434921 kcal Electronic energy + Delta-G solvation = -15335.687207 eV Core-core repulsion = 12544.206815 eV Total energy + Delta-G solvation = -2791.480392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00775 -38.66547 -37.13228 -34.15824 -33.84063 -31.69316 -30.71870 -30.48963 -25.42452 -24.01282 -22.74780 -20.88120 -19.41331 -18.41629 -17.86056 -16.67379 -15.99511 -15.78479 -14.82230 -14.69804 -14.44229 -14.06507 -13.68861 -13.62027 -13.50384 -12.71996 -12.09502 -11.75003 -11.65405 -11.15601 -11.01110 -10.51801 -10.34588 -10.02305 -9.78071 -9.67266 -8.81361 -8.66838 -8.56337 -8.13394 -6.61448 -3.93685 0.92281 1.41238 2.85492 3.16399 3.18742 3.23369 3.45889 3.72912 4.05377 4.42504 4.71909 4.81947 4.98550 5.10328 5.23616 5.47864 5.64754 5.77104 6.05813 6.14766 6.44234 6.57863 6.69774 6.73425 7.04442 7.27546 7.38363 7.90495 8.23682 8.44824 9.00887 9.35519 9.91807 10.55260 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.052279 B = 0.005465 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.455908 B = 5122.553303 C = 5648.166111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.294 4.294 8 H 0.109 0.891 9 N -0.541 5.541 10 C 0.462 3.538 11 O -0.592 6.592 12 C -0.099 4.099 13 C -0.078 4.078 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.566 3.434 18 N -0.855 5.855 19 O -0.537 6.537 20 C -0.016 4.016 21 H 0.277 0.723 22 H 0.394 0.606 23 H 0.133 0.867 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.400 0.600 27 H 0.402 0.598 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -13.010 -0.014 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.424 4.424 8 H 0.127 0.873 9 N -0.175 5.175 10 C 0.250 3.750 11 O -0.479 6.479 12 C -0.103 4.103 13 C -0.098 4.098 14 C -0.148 4.148 15 C -0.111 4.111 16 C -0.155 4.155 17 C 0.353 3.647 18 N -0.419 5.419 19 O -0.415 6.415 20 C -0.037 4.037 21 H 0.087 0.913 22 H 0.228 0.772 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.229 0.771 27 H 0.233 0.767 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.472 -12.594 -0.011 13.731 hybrid contribution -0.706 0.457 -0.004 0.841 sum -6.178 -12.137 -0.014 13.619 Atomic orbital electron populations 1.69571 1.06161 1.28963 1.48181 1.25397 0.95715 1.00153 0.96681 0.85816 0.78820 0.79703 0.79403 1.19571 1.20745 1.19578 1.19831 0.93827 0.82085 1.46641 0.87342 1.41884 1.09453 1.04706 1.61414 1.17658 0.87531 0.83157 0.86627 1.90623 1.13130 1.86830 1.57303 1.20372 0.93401 0.95007 1.01505 1.21680 0.93602 0.98838 0.95685 1.20959 0.99999 0.91908 1.01972 1.21212 0.92719 0.98190 0.98979 1.19719 0.93673 0.93118 1.08994 1.18337 0.87000 0.84301 0.75086 1.43739 1.11134 1.08248 1.78795 1.90829 1.13613 1.87676 1.49338 1.21359 1.01473 0.89375 0.91453 0.91305 0.77152 0.84941 0.85302 0.86024 0.77094 0.76721 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.22 13.05 55.50 0.72 -22.50 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.29 -8.10 9.68 -15.00 -0.15 -8.25 15 8 H 0.11 3.12 7.15 -52.49 -0.38 2.74 15 9 N -0.54 -13.78 5.23 -11.87 -0.06 -13.84 15 10 C 0.46 11.56 7.72 -12.37 -0.10 11.47 15 11 O -0.59 -16.96 15.91 5.30 0.08 -16.88 15 12 C -0.10 -1.98 5.87 -105.02 -0.62 -2.60 15 13 C -0.08 -1.27 9.54 -39.08 -0.37 -1.64 15 14 C -0.13 -1.64 10.02 -39.70 -0.40 -2.04 15 15 C -0.09 -1.08 9.54 -39.09 -0.37 -1.45 15 16 C -0.15 -2.31 5.87 -105.02 -0.62 -2.92 15 17 C 0.57 8.24 8.05 -12.32 -0.10 8.14 15 18 N -0.85 -7.60 8.82 30.53 0.27 -7.33 15 19 O -0.54 -10.16 17.18 5.32 0.09 -10.07 15 20 C -0.02 -0.31 9.14 -38.76 -0.35 -0.66 15 21 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 22 H 0.39 9.33 5.92 -40.82 -0.24 9.09 15 23 H 0.13 2.09 6.39 -52.49 -0.34 1.75 15 24 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 25 H 0.12 0.90 6.39 -52.49 -0.34 0.56 15 26 H 0.40 2.30 6.85 -40.82 -0.28 2.02 15 27 H 0.40 2.92 8.93 -40.82 -0.36 2.56 15 28 H 0.15 3.08 7.23 -52.48 -0.38 2.70 15 LS Contribution 257.20 15.07 3.88 3.88 Total: -1.00 -33.56 257.20 -5.08 -38.64 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -1.87 Total: 12.16 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.17 Total: 0.57 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.93 Total: -43.67 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: 0.18 Total: -26.95 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.56 -5.08 -38.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.800 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds