Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47341 * 339.44359 * 3 2 1 5 5 C 1.36680 * 119.99780 * 263.30104 * 4 3 2 6 6 H 1.08008 * 119.99631 * 214.69008 * 5 4 3 7 7 C 1.39161 * 120.00556 * 34.69857 * 5 4 3 8 8 N 1.31296 * 119.99241 * 6.25579 * 7 5 4 9 9 Si 1.86793 * 120.00141 * 186.26271 * 7 5 4 10 10 H 1.48493 * 109.47550 * 59.99828 * 9 7 5 11 11 H 1.48506 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47092 * 299.99492 * 9 7 5 13 13 C 1.34772 * 120.00169 * 83.29796 * 4 3 2 14 14 O 1.21656 * 119.99715 * 355.28081 * 13 4 3 15 15 C 1.47290 * 120.00377 * 174.99657 * 13 4 3 16 16 C 1.36994 * 126.95965 * 186.27072 * 15 13 4 17 17 C 1.41176 * 103.83713 * 179.87786 * 16 15 13 18 18 C 1.50704 * 126.69130 * 180.09890 * 17 16 15 19 19 N 1.30166 * 106.61726 * 0.39759 * 17 16 15 20 20 O 1.20891 * 112.00750 * 359.73696 * 19 17 16 21 21 H 4.40638 * 5.51519 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.46947 * 219.44656 * 3 2 1 23 23 H 1.09000 * 109.47419 * 99.44239 * 3 2 1 24 24 H 0.97003 * 119.99545 * 179.97438 * 8 7 5 25 25 H 1.08002 * 128.07973 * 0.02562 * 16 15 13 26 26 H 1.08992 * 109.47259 * 270.32561 * 18 17 16 27 27 H 1.09003 * 109.47022 * 30.32589 * 18 17 16 28 28 H 1.08999 * 109.47171 * 150.32156 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2924 0.4850 5 6 3.4930 -1.4396 1.7958 6 1 4.3130 -2.0903 2.0618 7 6 2.8010 -0.7512 2.7878 8 7 1.7293 -0.0581 2.4799 9 14 3.3971 -0.8133 4.5569 10 1 4.7750 -0.2653 4.6347 11 1 2.4935 -0.0027 5.4124 12 1 3.3968 -2.2209 5.0303 13 6 3.2317 -2.3368 -0.3613 14 8 2.8330 -2.2311 -1.5058 15 6 3.8257 -3.6041 0.0975 16 6 4.1026 -4.7078 -0.6653 17 6 4.6570 -5.6238 0.2549 18 6 5.1471 -7.0168 -0.0456 19 7 4.6563 -5.0328 1.4147 20 8 4.2012 -3.9145 1.3530 21 1 -1.0498 -0.0005 0.0000 22 1 3.0089 0.7944 0.6529 23 1 3.0093 0.1694 -1.0137 24 1 1.2467 0.4214 3.1714 25 1 3.9378 -4.8443 -1.7239 26 1 4.3260 -7.7240 0.0711 27 1 5.5195 -7.0581 -1.0692 28 1 5.9506 -7.2759 0.6439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389591155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = 76.794162 kcal Electronic energy + Delta-G solvation = -16184.475833 eV Core-core repulsion = 13398.685961 eV Total energy + Delta-G solvation = -2785.789872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.73781 -40.54978 -37.24348 -35.64473 -33.90033 -33.53716 -32.52394 -29.48466 -28.50926 -26.96267 -24.27148 -23.39752 -21.05603 -20.06843 -18.99277 -18.58090 -17.77453 -17.22077 -16.60013 -16.22524 -15.84042 -15.16857 -14.52125 -14.31122 -14.09297 -14.00757 -13.90143 -13.63340 -13.38651 -12.85942 -12.62853 -12.23703 -12.12959 -11.30055 -11.27398 -10.94915 -10.74108 -10.59753 -10.57286 -9.86602 -8.32582 -6.15839 -0.03646 1.18415 1.45967 1.47643 1.54469 1.78965 2.18181 2.23386 2.32064 2.45391 2.98491 3.07594 3.29403 3.73665 3.92744 4.17852 4.26580 4.49883 4.72129 4.75126 4.82240 4.88037 4.91403 5.29196 5.39076 5.43732 5.67304 6.27340 6.90288 7.12501 7.19542 7.36505 7.66020 8.61641 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.010726 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.720013 B = 2609.850913 C = 3627.120427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.144 4.144 3 C 0.244 3.756 4 N -0.417 5.417 5 C -0.368 4.368 6 H 0.109 0.891 7 C 0.014 3.986 8 N -0.863 5.863 9 Si 0.986 3.014 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.273 1.273 13 C 0.518 3.482 14 O -0.604 6.604 15 C -0.050 4.050 16 C -0.187 4.187 17 C 0.017 3.983 18 C -0.069 4.069 19 N -0.396 5.396 20 O 0.105 5.895 21 H 0.232 0.768 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.276 0.724 25 H 0.194 0.806 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 -5.943 -1.687 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.145 4.145 3 C 0.122 3.878 4 N -0.132 5.132 5 C -0.496 4.496 6 H 0.126 0.874 7 C -0.193 4.193 8 N -0.497 5.497 9 Si 0.809 3.191 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.199 1.199 13 C 0.306 3.694 14 O -0.492 6.492 15 C -0.116 4.116 16 C -0.210 4.210 17 C -0.141 4.141 18 C -0.126 4.126 19 N -0.105 5.105 20 O 0.041 5.959 21 H 0.248 0.752 22 H 0.117 0.883 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.211 0.789 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.097 -6.046 -0.907 7.359 hybrid contribution -0.437 0.383 0.204 0.616 sum 3.659 -5.663 -0.702 6.779 Atomic orbital electron populations 1.25013 0.96280 1.00094 1.05517 1.23192 0.94891 1.00230 0.96215 1.18128 0.85010 0.86203 0.98431 1.43680 1.52798 1.07438 1.09286 1.20037 1.17177 1.31621 0.80751 0.87377 1.26273 0.94068 0.95205 1.03719 1.70028 1.15340 1.28756 1.35547 0.85096 0.78731 0.78534 0.76760 1.18439 1.20156 1.19866 1.17105 0.84272 0.81847 0.86169 1.90679 1.55802 1.82465 1.20231 1.24269 1.03664 0.98522 0.85144 1.23026 1.03894 0.91117 1.02922 1.24243 1.00837 1.01131 0.87909 1.20366 1.02198 0.85519 1.04487 1.73681 1.17262 0.94712 1.24838 1.85287 1.57967 1.23933 1.28697 0.75177 0.88333 0.90272 0.91344 0.78853 0.88655 0.87480 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.07 19.15 74.32 1.42 -9.65 15 2 C -0.14 -7.00 11.00 31.12 0.34 -6.66 15 3 C 0.24 11.67 5.04 84.57 0.43 12.09 15 4 N -0.42 -21.28 2.56 -649.34 -1.66 -22.94 15 5 C -0.37 -18.76 8.37 84.16 0.70 -18.06 15 6 H 0.11 5.45 5.46 -2.91 -0.02 5.44 15 7 C 0.01 0.70 5.14 84.99 0.44 1.13 15 8 N -0.86 -43.78 9.35 21.70 0.20 -43.58 15 9 Si 0.99 39.65 29.56 68.60 2.03 41.68 15 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 11 H -0.28 -10.79 7.11 99.48 0.71 -10.08 15 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 13 C 0.52 26.15 7.54 86.62 0.65 26.80 15 14 O -0.60 -32.01 16.63 -4.21 -0.07 -32.08 15 15 C -0.05 -2.26 6.94 24.36 0.17 -2.09 15 16 C -0.19 -6.79 10.92 22.70 0.25 -6.54 15 17 C 0.02 0.55 7.31 43.53 0.32 0.87 15 18 C -0.07 -1.39 10.47 71.24 0.75 -0.64 15 19 N -0.40 -15.89 12.04 -48.78 -0.59 -16.48 15 20 O 0.11 4.76 8.10 65.54 0.53 5.29 15 21 H 0.23 8.04 7.80 -4.43 -0.03 8.01 15 22 H 0.10 4.65 7.19 -2.39 -0.02 4.63 15 23 H 0.08 3.55 7.70 -2.39 -0.02 3.53 15 24 H 0.28 13.35 8.31 -92.71 -0.77 12.58 15 25 H 0.19 5.98 8.06 -2.91 -0.02 5.96 15 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 Total: -1.00 -62.94 260.38 7.10 -55.84 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.18 Total: 15.01 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.47 Total: -2.74 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.04 Total: -83.00 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.46 Total: -26.79 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -62.94 7.10 -55.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389591155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.637 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds