Wall clock time and date at job start Sun Mar 29 2020 22:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47209 * 300.00112 * 3 2 1 6 6 H 1.48503 * 109.46718 * 60.00207 * 3 2 1 7 7 C 1.37874 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47484 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00025 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46676 * 180.02562 * 11 10 9 13 13 C 1.32564 * 120.00027 * 115.00541 * 12 11 10 14 14 C 1.47815 * 120.00319 * 179.97438 * 13 12 11 15 15 C 1.39531 * 120.14192 * 179.97438 * 14 13 12 16 16 C 1.37972 * 119.85483 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.14331 * 359.97438 * 16 15 14 18 18 C 1.38345 * 120.28513 * 0.02562 * 17 16 15 19 19 C 1.37975 * 120.14228 * 0.02562 * 18 17 16 20 20 H 0.97002 * 119.99889 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47022 * 59.99787 * 9 7 2 22 22 H 1.09000 * 109.47452 * 299.99914 * 9 7 2 23 23 H 1.08997 * 109.47200 * 60.00435 * 11 10 9 24 24 H 1.08999 * 109.47502 * 300.00355 * 11 10 9 25 25 H 1.08005 * 120.00327 * 294.99693 * 12 11 10 26 26 H 1.08005 * 120.00176 * 359.97438 * 13 12 11 27 27 H 1.08000 * 120.07490 * 359.96214 * 15 14 13 28 28 H 1.08004 * 119.93207 * 180.02562 * 16 15 14 29 29 H 1.07997 * 119.86073 * 179.74273 * 17 16 15 30 30 H 1.08003 * 119.92854 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.07404 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 16 2.4297 -3.8780 -0.0029 11 6 1.3513 -5.3366 -0.0034 12 6 2.1953 -6.5852 -0.0039 13 6 2.1645 -7.4064 1.0363 14 6 2.9918 -8.6313 1.0357 15 6 2.9620 -9.4975 2.1292 16 6 3.7363 -10.6395 2.1222 17 6 4.5406 -10.9268 1.0339 18 6 4.5747 -10.0721 -0.0534 19 6 3.8060 -8.9263 -0.0584 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5562 -0.8920 22 1 0.6240 -2.5575 0.8880 23 1 0.7219 -5.3229 -0.8932 24 1 0.7224 -5.3239 0.8867 25 1 2.8253 -6.8110 -0.8516 26 1 1.5348 -7.1806 1.8842 27 1 2.3344 -9.2745 2.9794 28 1 3.7138 -11.3110 2.9678 29 1 5.1479 -11.8198 1.0350 30 1 5.2050 -10.3018 -0.8999 31 1 3.8331 -8.2601 -0.9080 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009674.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:12 Heat of formation + Delta-G solvation = 21.235129 kcal Electronic energy + Delta-G solvation = -12633.193490 eV Core-core repulsion = 10391.287612 eV Total energy + Delta-G solvation = -2241.905878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23912 -35.05392 -33.15053 -31.10388 -30.83514 -28.54483 -26.54129 -23.25478 -22.85623 -21.95531 -19.29288 -17.23762 -16.49479 -15.60115 -15.19438 -14.99210 -14.49514 -14.22116 -13.56091 -13.24461 -13.15656 -12.89827 -12.51669 -12.30976 -11.97250 -11.58821 -11.17185 -10.92412 -10.87898 -10.71540 -10.40719 -9.84892 -9.54329 -9.04507 -8.88153 -8.62554 -8.02053 -6.69797 -6.19996 -4.24144 0.85167 1.31877 2.23516 3.05350 3.24963 3.32143 3.39005 3.86145 3.88936 4.35446 4.65834 4.74415 4.86259 4.98789 5.17204 5.18236 5.34375 5.35979 5.50875 5.67368 5.86798 5.93759 5.98462 6.26921 6.37270 6.41082 6.69155 6.83223 6.91927 7.08742 7.10443 7.74968 8.00689 8.78122 9.39011 10.91364 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.067254 B = 0.003635 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.232931 B = 7700.247969 C = 7821.333844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.090 3.910 10 S -0.302 6.302 11 C -0.067 4.067 12 C -0.100 4.100 13 C -0.129 4.129 14 C -0.042 4.042 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.118 4.118 20 H 0.265 0.735 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -19.013 1.661 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.057 4.057 10 S -0.073 6.073 11 C -0.214 4.214 12 C -0.118 4.118 13 C -0.151 4.151 14 C -0.042 4.042 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.148 4.148 18 C -0.136 4.136 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.767 -18.815 1.642 19.748 hybrid contribution -0.999 0.886 0.015 1.335 sum 4.768 -17.929 1.658 18.626 Atomic orbital electron populations 1.69965 1.06153 1.27237 1.49819 1.24973 0.94983 0.99309 0.94662 0.86289 0.80111 0.82493 0.77737 1.19389 1.20715 1.20717 1.20729 0.93534 0.88717 1.52089 0.91394 1.21076 0.93701 0.90837 1.00075 1.86782 1.20968 1.01520 1.98054 1.22303 0.99552 0.94832 1.04688 1.22941 0.97497 0.93123 0.98284 1.21624 1.00370 0.94064 0.99024 1.19103 0.96318 0.94569 0.94185 1.21276 0.99572 0.94427 0.97928 1.21070 0.97041 0.97298 0.98412 1.21167 0.99668 0.99750 0.94170 1.21082 0.99278 0.94719 0.98510 1.21382 0.96555 0.97368 0.98307 0.92549 0.94607 0.94603 0.89700 0.90367 0.86370 0.86207 0.85877 0.86160 0.86340 0.86090 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.58 9.13 -34.44 -0.31 -14.90 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 9 C 0.09 2.36 5.70 36.01 0.21 2.57 16 10 S -0.30 -6.67 21.64 -107.50 -2.33 -9.00 16 11 C -0.07 -1.13 6.39 36.01 0.23 -0.90 16 12 C -0.10 -1.44 8.94 -36.21 -0.32 -1.77 16 13 C -0.13 -1.72 9.52 -37.57 -0.36 -2.08 16 14 C -0.04 -0.52 5.87 -105.01 -0.62 -1.14 16 15 C -0.11 -1.26 9.79 -39.20 -0.38 -1.64 16 16 C -0.12 -1.18 10.03 -39.64 -0.40 -1.57 16 17 C -0.13 -1.24 10.04 -39.50 -0.40 -1.63 16 18 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 19 C -0.12 -1.39 9.40 -39.19 -0.37 -1.76 16 20 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 22 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.08 1.28 7.81 -51.92 -0.41 0.88 16 25 H 0.12 1.60 6.04 -52.48 -0.32 1.29 16 26 H 0.12 1.49 7.87 -52.48 -0.41 1.08 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.13 1.38 6.17 -52.49 -0.32 1.05 16 LS Contribution 286.64 15.07 4.32 4.32 Total: -1.00 -30.06 286.64 -9.47 -39.53 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.96 Total: -1.22 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -3.22 Total: -24.71 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -2.33 Total: -9.00 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.06 -9.47 -39.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009674.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds