Wall clock time and date at job start Sun Mar 29 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46881 * 269.94972 * 8 7 6 10 10 C 1.46899 * 110.99851 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46905 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46813 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00226 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99948 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99875 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47681 * 60.00027 * 16 14 12 18 18 H 1.48507 * 109.46883 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47221 * 299.99700 * 16 14 12 20 20 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 21 21 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 23 23 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 24 24 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 25 25 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 26 26 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 30 30 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 31 31 H 1.00903 * 111.00217 * 56.04860 * 9 8 7 32 32 H 1.08993 * 109.47361 * 299.99766 * 10 9 8 33 33 H 1.08997 * 109.47196 * 60.00602 * 10 9 8 34 34 H 1.08993 * 109.46995 * 300.00082 * 11 10 9 35 35 H 1.08997 * 109.46626 * 60.00346 * 11 10 9 36 36 H 0.96998 * 120.00298 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.00164 * 359.72517 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 7 4.3639 3.8543 2.9254 10 6 4.6467 4.5337 4.1967 11 6 6.0976 4.2695 4.6044 12 6 6.3879 4.9670 5.9084 13 1 5.6147 5.5409 6.3977 14 6 7.6405 4.8725 6.4769 15 7 8.5817 4.1732 5.8814 16 14 8.0000 5.7364 8.0935 17 1 7.0888 5.2182 9.1452 18 1 9.4083 5.4802 8.4892 19 1 7.7889 7.1974 7.9317 20 6 2.2626 2.0724 1.1970 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 2.0817 1.5638 -2.1327 27 1 2.9019 3.8853 -2.1326 28 1 3.3125 5.0461 0.0000 29 1 2.8097 5.1549 2.3720 30 1 2.2959 3.7017 3.2620 31 1 5.0134 4.1431 2.2092 32 1 4.4918 5.6060 4.0780 33 1 3.9778 4.1532 4.9687 34 1 6.2521 3.1971 4.7233 35 1 6.7668 4.6497 3.8326 36 1 9.4628 4.1064 6.2814 37 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564217290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:20 Heat of formation + Delta-G solvation = -2.921426 kcal Electronic energy + Delta-G solvation = -15274.324129 eV Core-core repulsion = 12822.169630 eV Total energy + Delta-G solvation = -2452.154500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49609 -36.10377 -34.17910 -32.98147 -31.38637 -29.55847 -28.76320 -25.39537 -23.99393 -23.28706 -21.80828 -20.59316 -20.01787 -16.52041 -16.27943 -15.80157 -15.23737 -14.67658 -14.43737 -14.15881 -13.82774 -13.66065 -13.28215 -13.04999 -12.39681 -12.15807 -12.07736 -12.04358 -11.74263 -11.26330 -11.03604 -10.93438 -10.80060 -10.73844 -10.52127 -9.97917 -9.40640 -9.17397 -8.70945 -8.58659 -8.33698 -7.79603 -5.98213 -4.01081 1.40222 1.47375 3.34404 3.38648 3.41031 3.78911 4.45757 4.67550 4.75927 4.87613 5.08437 5.12095 5.19711 5.23436 5.35799 5.37473 5.49690 5.55661 5.66446 5.77563 5.81015 5.87330 6.02119 6.15412 6.17685 6.33322 6.40285 6.51736 6.63477 6.76318 6.98518 7.07988 7.47899 7.74045 7.83280 7.96412 8.09976 8.44634 9.06018 9.62505 11.13196 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.044691 B = 0.003812 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.372172 B = 7344.280925 C = 7535.644161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.069 4.069 8 C 0.094 3.906 9 N -0.686 5.686 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.096 4.096 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.337 0.663 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 -4.639 -13.731 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.070 4.070 8 C -0.035 4.035 9 N -0.316 5.316 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.114 4.114 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.703 -5.293 -13.387 20.577 hybrid contribution 0.416 1.454 0.572 1.616 sum -14.288 -3.839 -12.815 19.573 Atomic orbital electron populations 1.21744 0.94917 1.01506 1.02132 1.20533 0.95990 0.92855 1.02858 1.19875 0.99392 0.96125 0.93202 1.20944 1.00994 0.95051 0.97278 1.21048 0.99948 0.94994 0.97762 1.21057 1.00679 1.00020 0.92169 1.19915 0.97775 0.94532 0.94761 1.20902 0.92771 0.96684 0.93108 1.60652 1.01640 1.62785 1.06557 1.22193 1.01147 0.94079 0.88872 1.19065 0.88490 0.97836 0.95808 1.21145 0.96828 1.31529 1.06670 0.92794 1.25007 0.96325 0.95462 0.97575 1.69964 1.03461 1.40588 1.39224 0.86638 0.77235 0.80017 0.83975 1.20211 1.21263 1.20292 1.20922 0.98951 0.94054 0.97504 0.92549 0.92510 0.92739 0.91232 0.90887 0.86580 0.86376 0.86422 0.94999 0.90619 0.84545 0.96615 0.92285 0.95618 0.96809 0.92923 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.83 16 2 C -0.09 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.09 -1.01 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.39 9.70 -39.59 -0.38 -1.77 16 5 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 6 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 7 C -0.07 -0.97 5.39 -104.62 -0.56 -1.54 16 8 C 0.09 1.44 5.81 -4.97 -0.03 1.41 16 9 N -0.69 -12.74 6.49 -115.06 -0.75 -13.49 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.10 -1.28 9.36 -39.58 -0.37 -1.65 16 21 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 31 H 0.34 6.17 8.72 -39.29 -0.34 5.82 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -30.66 313.50 -9.57 -40.22 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.21 Total: 0.71 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.05 Total: -22.48 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.01 Total: -40.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.66 -9.57 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564217290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.302 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds