Wall clock time and date at job start Sun Mar 29 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32911 * 119.81770 * 319.70318 * 3 2 1 5 5 C 1.31443 * 121.69859 * 180.02562 * 4 3 2 6 6 C 1.38730 * 121.13580 * 359.97438 * 5 4 3 7 7 C 1.38295 * 119.50529 * 0.02562 * 6 5 4 8 8 C 1.39516 * 118.43065 * 359.97438 * 7 6 5 9 9 S 1.76201 * 120.56595 * 179.97438 * 8 7 6 10 10 C 1.81393 * 103.00089 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47194 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47137 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00041 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99675 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99984 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00386 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47103 * 89.99874 * 16 14 12 18 18 H 1.48497 * 109.47374 * 210.00809 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00273 * 16 14 12 20 20 H 1.08000 * 119.43222 * 180.02562 * 5 4 3 21 21 H 1.08004 * 120.24898 * 179.97438 * 6 5 4 22 22 H 1.07993 * 120.78297 * 179.72628 * 7 6 5 23 23 H 1.08999 * 109.46901 * 299.99482 * 10 9 8 24 24 H 1.08997 * 109.47678 * 59.99321 * 10 9 8 25 25 H 1.08999 * 109.46800 * 299.99576 * 11 10 9 26 26 H 1.09006 * 109.47181 * 59.99418 * 11 10 9 27 27 H 0.96994 * 120.00094 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2293 -0.8786 0.7458 5 6 4.5430 -0.9106 0.7741 6 6 5.2985 -0.0230 0.0218 7 6 4.6600 0.9125 -0.7717 8 6 3.2650 0.9292 -0.7872 9 16 2.3938 2.0976 -1.7774 10 6 3.7283 3.0353 -2.5712 11 6 3.1265 4.1081 -3.4811 12 6 4.2352 4.8875 -4.1402 13 1 5.2660 4.6425 -3.9307 14 6 3.9336 5.9141 -5.0098 15 7 4.9011 6.5946 -5.5846 16 14 2.1508 6.3383 -5.3717 17 1 1.6767 7.3553 -4.3991 18 1 2.0410 6.8816 -6.7494 19 1 1.3172 5.1148 -5.2543 20 1 5.0429 -1.6409 1.3930 21 1 6.3773 -0.0617 0.0561 22 1 5.2278 1.6161 -1.3623 23 1 4.3433 3.5101 -1.8067 24 1 4.3440 2.3596 -3.1648 25 1 2.5118 3.6329 -4.2456 26 1 2.5105 4.7840 -2.8879 27 1 4.6890 7.3170 -6.1961 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580093294.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:19 Heat of formation + Delta-G solvation = 58.121190 kcal Electronic energy + Delta-G solvation = -12848.104847 eV Core-core repulsion = 10504.258125 eV Total energy + Delta-G solvation = -2343.846722 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 234.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.32729 -36.54469 -34.00244 -32.96462 -31.78165 -31.41340 -26.10067 -24.76977 -24.00002 -21.17118 -19.49366 -17.51497 -17.07544 -16.74128 -15.62580 -14.97712 -14.57504 -14.20368 -14.05853 -13.63058 -13.22124 -12.93254 -12.88251 -12.77851 -12.52517 -11.86909 -11.44024 -10.74735 -10.45200 -10.41012 -10.23869 -9.92297 -9.78872 -9.70792 -9.40095 -8.72236 -7.51270 -6.22990 -4.24852 0.33895 0.87691 1.46551 2.40881 2.65258 2.73185 3.21417 3.29751 3.33070 3.42045 3.70095 4.30061 4.52530 4.59509 4.70960 4.95366 5.10412 5.11222 5.53767 5.58132 5.63752 5.79623 6.18451 6.23471 6.87152 6.99519 7.31166 7.49193 7.52949 8.27582 8.76896 9.36685 10.89287 Molecular weight = 234.05amu Principal moments of inertia in cm(-1) A = 0.037421 B = 0.005836 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.062451 B = 4796.359173 C = 5523.975639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.271 3.729 3 C 0.189 3.811 4 N -0.435 5.435 5 C 0.088 3.912 6 C -0.121 4.121 7 C -0.092 4.092 8 C -0.080 4.080 9 S -0.103 6.103 10 C -0.080 4.080 11 C 0.002 3.998 12 C -0.525 4.525 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.895 5.895 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.263 1.263 20 H 0.168 0.832 21 H 0.147 0.853 22 H 0.152 0.848 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -12.222 10.331 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.047 4.047 3 C 0.044 3.956 4 N -0.145 5.145 5 C -0.077 4.077 6 C -0.143 4.143 7 C -0.125 4.125 8 C -0.199 4.199 9 S 0.147 5.853 10 C -0.228 4.228 11 C -0.038 4.038 12 C -0.564 4.564 13 H 0.094 0.906 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.703 3.297 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.188 1.188 20 H 0.185 0.815 21 H 0.165 0.835 22 H 0.170 0.830 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.705 -12.389 10.468 16.309 hybrid contribution 1.548 0.730 -0.592 1.811 sum -0.157 -11.659 9.877 15.281 Atomic orbital electron populations 1.81191 1.11323 1.06826 1.06923 1.24745 0.91535 0.94146 0.94249 1.15842 0.86072 0.95426 0.98243 1.67499 1.10836 1.19494 1.16709 1.22731 0.88170 0.98486 0.98287 1.22331 1.02079 0.94604 0.95309 1.21780 0.92067 0.99439 0.99166 1.23095 0.97550 0.99460 0.99845 1.86021 1.16431 1.33735 1.49146 1.23993 0.96899 1.00248 1.01668 1.19404 0.97689 0.92572 0.94093 1.20856 0.93250 1.15968 1.26364 0.90584 1.24942 0.97381 0.95484 0.95080 1.69877 1.32034 1.21640 1.29728 0.86818 0.85458 0.79408 0.77992 1.19960 1.21012 1.18795 0.81472 0.83514 0.83044 0.89355 0.89329 0.95259 0.95710 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.47 18.54 41.84 0.78 -5.69 15 2 C 0.27 4.19 14.49 -22.47 -0.33 3.87 15 3 C 0.19 2.63 6.61 -84.71 -0.56 2.07 15 4 N -0.44 -5.38 10.27 -10.89 -0.11 -5.49 15 5 C 0.09 0.78 11.17 -17.54 -0.20 0.58 15 6 C -0.12 -0.99 10.10 -39.38 -0.40 -1.39 15 7 C -0.09 -1.02 9.46 -39.08 -0.37 -1.39 15 8 C -0.08 -1.10 6.17 -38.34 -0.24 -1.33 15 9 S -0.10 -1.67 20.92 -107.50 -2.25 -3.92 15 10 C -0.08 -1.39 4.30 37.16 0.16 -1.23 15 11 C 0.00 0.04 4.05 -27.88 -0.11 -0.07 15 12 C -0.52 -13.82 9.66 -34.44 -0.33 -14.15 15 13 H 0.08 2.11 7.99 -52.49 -0.42 1.69 15 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 15 N -0.90 -26.20 13.96 55.43 0.77 -25.43 15 16 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 15 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 19 H -0.26 -6.06 6.54 56.52 0.37 -5.69 15 20 H 0.17 0.87 8.06 -52.49 -0.42 0.44 15 21 H 0.15 0.72 8.06 -52.48 -0.42 0.30 15 22 H 0.15 1.56 6.06 -52.49 -0.32 1.24 15 23 H 0.09 1.43 7.78 -51.92 -0.40 1.03 15 24 H 0.09 1.44 7.79 -51.93 -0.40 1.04 15 25 H 0.03 0.66 7.20 -51.93 -0.37 0.28 15 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 15 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -30.09 262.21 -6.32 -36.41 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: -2.32 Total: -4.83 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.47 Total: -11.11 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.44 Total: -36.61 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.25 Total: -3.92 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.09 -6.32 -36.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580093294.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.535 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds