Wall clock time and date at job start Sun Mar 29 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32911 * 119.81770 * 319.70318 * 3 2 1 5 5 C 1.31443 * 121.69859 * 180.02562 * 4 3 2 6 6 C 1.38730 * 121.13580 * 359.97438 * 5 4 3 7 7 C 1.38295 * 119.50529 * 0.02562 * 6 5 4 8 8 C 1.39516 * 118.43065 * 359.97438 * 7 6 5 9 9 S 1.76201 * 120.56595 * 179.97438 * 8 7 6 10 10 C 1.81393 * 103.00089 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47194 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47137 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00041 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99675 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99984 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00386 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47103 * 89.99874 * 16 14 12 18 18 H 1.48497 * 109.47374 * 210.00809 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00273 * 16 14 12 20 20 H 1.08000 * 119.43222 * 180.02562 * 5 4 3 21 21 H 1.08004 * 120.24898 * 179.97438 * 6 5 4 22 22 H 1.07993 * 120.78297 * 179.72628 * 7 6 5 23 23 H 1.08999 * 109.46901 * 299.99482 * 10 9 8 24 24 H 1.08997 * 109.47678 * 59.99321 * 10 9 8 25 25 H 1.08999 * 109.46800 * 299.99576 * 11 10 9 26 26 H 1.09006 * 109.47181 * 59.99418 * 11 10 9 27 27 H 0.96994 * 120.00094 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2293 -0.8786 0.7458 5 6 4.5430 -0.9106 0.7741 6 6 5.2985 -0.0230 0.0218 7 6 4.6600 0.9125 -0.7717 8 6 3.2650 0.9292 -0.7872 9 16 2.3938 2.0976 -1.7774 10 6 3.7283 3.0353 -2.5712 11 6 3.1265 4.1081 -3.4811 12 6 4.2352 4.8875 -4.1402 13 1 5.2660 4.6425 -3.9307 14 6 3.9336 5.9141 -5.0098 15 7 4.9011 6.5946 -5.5846 16 14 2.1508 6.3383 -5.3717 17 1 1.6767 7.3553 -4.3991 18 1 2.0410 6.8816 -6.7494 19 1 1.3172 5.1148 -5.2543 20 1 5.0429 -1.6409 1.3930 21 1 6.3773 -0.0617 0.0561 22 1 5.2278 1.6161 -1.3623 23 1 4.3433 3.5101 -1.8067 24 1 4.3440 2.3596 -3.1648 25 1 2.5118 3.6329 -4.2456 26 1 2.5105 4.7840 -2.8879 27 1 4.6890 7.3170 -6.1961 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580093294.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:19 Heat of formation + Delta-G solvation = 39.586965 kcal Electronic energy + Delta-G solvation = -12848.908552 eV Core-core repulsion = 10504.258125 eV Total energy + Delta-G solvation = -2344.650426 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 234.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21125 -37.72948 -35.83457 -33.96478 -33.22672 -32.67237 -27.78471 -25.87418 -24.84476 -22.89545 -20.50306 -19.18615 -18.45275 -17.62923 -16.64313 -16.31937 -16.08020 -15.62413 -15.28404 -14.85600 -14.56506 -14.33819 -14.02588 -13.98328 -13.80529 -13.27264 -13.17086 -12.30985 -12.08536 -11.93241 -11.63282 -11.52378 -11.15692 -10.81287 -10.75476 -10.55525 -8.70262 -8.33853 -6.38865 -0.58456 0.03790 0.28367 1.21679 1.34194 1.37281 1.45611 1.46873 1.71755 2.31969 2.40352 2.75720 3.01929 3.69045 3.75140 3.92504 4.11408 4.13194 4.17043 4.41784 4.68534 4.82331 5.05100 5.12864 5.24007 5.48348 5.51366 6.17200 6.17779 6.67300 6.67650 7.25948 8.81518 Molecular weight = 234.05amu Principal moments of inertia in cm(-1) A = 0.037421 B = 0.005836 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.062451 B = 4796.359173 C = 5523.975639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.280 3.720 3 C 0.170 3.830 4 N -0.454 5.454 5 C 0.101 3.899 6 C -0.096 4.096 7 C -0.099 4.099 8 C -0.087 4.087 9 S -0.136 6.136 10 C -0.067 4.067 11 C 0.002 3.998 12 C -0.526 4.526 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.941 5.941 16 Si 0.936 3.064 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.252 1.252 20 H 0.213 0.787 21 H 0.193 0.807 22 H 0.158 0.842 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -13.776 11.667 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.037 4.037 3 C 0.027 3.973 4 N -0.164 5.164 5 C -0.064 4.064 6 C -0.118 4.118 7 C -0.130 4.130 8 C -0.206 4.206 9 S 0.111 5.889 10 C -0.215 4.215 11 C -0.037 4.037 12 C -0.565 4.565 13 H 0.069 0.931 14 C -0.182 4.182 15 N -0.581 5.581 16 Si 0.760 3.240 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.176 1.176 20 H 0.229 0.771 21 H 0.210 0.790 22 H 0.175 0.825 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.760 -13.963 11.821 18.311 hybrid contribution 1.461 1.057 -0.874 2.004 sum 0.701 -12.906 10.948 16.938 Atomic orbital electron populations 1.81175 1.12382 1.08157 1.08324 1.25197 0.92143 0.93113 0.93213 1.15778 0.85292 0.96609 0.99609 1.67571 1.12691 1.19336 1.16847 1.23596 0.86955 0.98440 0.97368 1.22839 1.04223 0.92153 0.92575 1.22028 0.90884 1.00349 0.99755 1.22923 0.98487 0.99061 1.00126 1.86014 1.16610 1.35454 1.50794 1.23647 0.97055 0.99465 1.01365 1.19254 0.96291 0.93486 0.94627 1.21197 0.93510 1.15934 1.25895 0.93103 1.25789 1.01410 0.95725 0.95265 1.70006 1.34242 1.22762 1.31118 0.85858 0.80647 0.79586 0.77868 1.19258 1.20782 1.17603 0.77090 0.79023 0.82459 0.88464 0.88483 0.95637 0.95774 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -14.41 18.54 19.00 0.35 -14.05 15 2 C 0.28 8.67 14.49 88.33 1.28 9.95 15 3 C 0.17 4.50 6.61 40.72 0.27 4.77 15 4 N -0.45 -9.97 10.27 -188.38 -1.94 -11.90 15 5 C 0.10 1.29 11.17 84.87 0.95 2.24 15 6 C -0.10 -1.09 10.10 22.40 0.23 -0.86 15 7 C -0.10 -1.86 9.46 22.59 0.21 -1.65 15 8 C -0.09 -2.23 6.17 23.07 0.14 -2.09 15 9 S -0.14 -4.35 20.92 -56.49 -1.18 -5.53 15 10 C -0.07 -2.29 4.30 71.98 0.31 -1.98 15 11 C 0.00 0.11 4.05 29.85 0.12 0.23 15 12 C -0.53 -27.95 9.66 25.60 0.25 -27.71 15 13 H 0.05 2.88 7.99 -2.91 -0.02 2.86 15 14 C 0.02 0.93 5.47 84.66 0.46 1.39 15 15 N -0.94 -56.15 13.96 21.45 0.30 -55.85 15 16 Si 0.94 42.86 27.47 68.60 1.88 44.74 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 19 H -0.25 -10.98 6.54 99.48 0.65 -10.33 15 20 H 0.21 0.82 8.06 -2.91 -0.02 0.80 15 21 H 0.19 0.54 8.06 -2.91 -0.02 0.52 15 22 H 0.16 2.79 6.06 -2.91 -0.02 2.77 15 23 H 0.10 3.06 7.78 -2.39 -0.02 3.04 15 24 H 0.10 3.06 7.79 -2.39 -0.02 3.04 15 25 H 0.03 1.13 7.20 -2.39 -0.02 1.11 15 26 H 0.02 1.05 7.57 -2.38 -0.02 1.03 15 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 Total: -1.00 -67.17 262.21 4.77 -62.40 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.13 Total: -4.09 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.22 Total: -15.71 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.28 Total: -81.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -1.18 Total: -5.53 kcal Total: -67.17 4.77 -62.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580093294.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.984 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds