Wall clock time and date at job start Sun Mar 29 2020 21:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46714 * 2 1 4 4 C 1.38256 * 119.99760 * 270.02019 * 3 2 1 5 5 C 1.38214 * 120.00292 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99432 * 359.81088 * 5 4 3 7 7 C 1.38215 * 119.99942 * 0.41922 * 6 5 4 8 8 C 1.50697 * 119.99689 * 179.80908 * 7 6 5 9 9 N 1.46900 * 109.47224 * 269.72864 * 8 7 6 10 10 C 1.46903 * 111.00000 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47052 * 34.99701 * 10 9 8 12 12 C 1.53000 * 109.47096 * 275.00251 * 10 9 8 13 13 C 1.50694 * 109.47066 * 155.00016 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.38211 * 120.00241 * 90.00403 * 3 2 1 22 22 H 1.08994 * 109.47151 * 60.00258 * 1 2 3 23 23 H 1.09002 * 109.47284 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47296 * 299.99862 * 1 2 3 25 25 H 1.09001 * 109.46672 * 239.99797 * 2 1 3 26 26 H 1.08999 * 109.46705 * 119.99901 * 2 1 3 27 27 H 1.08001 * 120.00409 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.00411 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.99566 * 180.23349 * 6 5 4 30 30 H 1.09002 * 109.46917 * 149.72743 * 8 7 6 31 31 H 1.09001 * 109.47224 * 29.72848 * 8 7 6 32 32 H 1.00896 * 110.99858 * 303.95284 * 9 8 7 33 33 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 34 34 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 35 35 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.99926 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0727 -1.1974 5 6 2.7223 3.3760 -1.1975 6 6 2.9489 4.0291 -0.0001 7 6 2.7235 3.3758 1.1969 8 6 2.9746 4.0863 2.5019 9 7 4.3618 3.8553 2.9263 10 6 4.6432 4.5341 4.1983 11 1 3.7529 4.5118 4.8268 12 6 5.0380 5.9868 3.9248 13 6 5.7739 3.8306 4.9037 14 1 6.2369 2.9654 4.4526 15 6 6.2166 4.2908 6.1258 16 7 5.6525 5.3440 6.6755 17 14 7.6176 3.4182 7.0005 18 1 7.9022 4.1045 8.2864 19 1 7.2341 2.0084 7.2656 20 1 8.8308 3.4486 6.1447 21 6 2.2627 2.0724 1.1969 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0816 1.5638 -2.1327 28 1 2.9016 3.8853 -2.1328 29 1 3.3048 5.0488 -0.0002 30 1 2.2935 3.7024 3.2615 31 1 2.8078 5.1556 2.3714 32 1 4.5602 2.8682 2.9919 33 1 5.9283 6.0092 3.2963 34 1 4.2202 6.4956 3.4145 35 1 5.2473 6.4903 4.8685 36 1 5.9638 5.6674 7.5354 37 1 2.0824 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593182862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:35 Heat of formation + Delta-G solvation = 3.990907 kcal Electronic energy + Delta-G solvation = -15755.929265 eV Core-core repulsion = 13304.074507 eV Total energy + Delta-G solvation = -2451.854758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.32171 -35.99882 -34.13556 -32.71146 -30.92106 -29.33603 -28.02330 -25.36059 -24.23840 -23.84755 -21.60157 -20.08083 -19.70360 -16.67183 -16.11246 -15.49176 -14.96980 -14.75338 -14.12381 -13.81485 -13.62677 -13.41176 -13.02926 -12.87801 -12.35907 -11.98003 -11.76492 -11.62828 -11.34180 -11.17429 -10.95218 -10.77382 -10.69892 -10.53070 -10.24908 -10.11754 -9.91035 -8.85144 -8.58547 -8.46820 -8.35567 -7.25549 -6.02045 -4.08546 1.59920 1.62167 3.31758 3.36008 3.39101 3.97402 4.41360 4.79026 4.88834 5.14294 5.21261 5.28979 5.31675 5.36197 5.47256 5.61371 5.67757 5.71052 5.83313 5.93744 6.01639 6.10529 6.18219 6.35429 6.38253 6.69146 6.77617 6.87143 7.00075 7.14540 7.23514 7.25635 7.50577 7.78481 7.90139 8.27887 8.39425 8.67131 9.01736 9.57280 11.04249 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.005067 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.679973 B = 5524.147386 C = 5965.940927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.062 4.062 8 C 0.095 3.905 9 N -0.682 5.682 10 C 0.210 3.790 11 H 0.001 0.999 12 C -0.124 4.124 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.287 1.287 19 H -0.278 1.278 20 H -0.276 1.276 21 C -0.114 4.114 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.331 0.669 33 H 0.031 0.969 34 H 0.004 0.996 35 H 0.081 0.919 36 H 0.261 0.739 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 -6.598 -12.777 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.035 4.035 9 N -0.313 5.313 10 C 0.103 3.897 11 H 0.019 0.981 12 C -0.182 4.182 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.132 4.132 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.396 -5.950 -12.963 16.551 hybrid contribution 0.342 -0.907 1.130 1.489 sum -8.054 -6.857 -11.832 15.871 Atomic orbital electron populations 1.21742 0.94995 1.01381 1.02172 1.20516 0.95962 0.93009 1.02624 1.19794 0.99687 0.95957 0.93205 1.20896 1.01569 0.95166 0.97093 1.21078 1.00036 0.94950 0.97838 1.21044 0.99323 1.00255 0.91753 1.20052 0.96495 0.93999 0.95696 1.20916 0.91881 0.99273 0.91398 1.60799 1.18404 1.16464 1.35615 1.19135 0.95245 0.91903 0.83397 0.98139 1.21714 0.97427 0.97936 1.01173 1.21221 1.17783 1.13284 1.03420 0.92283 1.24918 0.96845 0.95051 0.97156 1.69891 1.41783 1.23676 1.17565 0.86574 0.82581 0.79583 0.78733 1.21287 1.20340 1.20182 1.20946 1.00375 0.94528 0.97391 0.92720 0.92660 0.92516 0.91342 0.91099 0.86790 0.86513 0.86104 0.95458 0.91006 0.85164 0.94953 0.97726 0.90086 0.92871 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.09 -1.13 5.13 -104.63 -0.54 -1.66 16 4 C -0.13 -1.61 9.70 -39.58 -0.38 -2.00 16 5 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 6 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 7 C -0.06 -1.01 5.39 -104.63 -0.56 -1.58 16 8 C 0.09 1.77 5.61 -4.98 -0.03 1.74 16 9 N -0.68 -15.00 6.29 -109.22 -0.69 -15.68 16 10 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 11 H 0.00 0.03 7.80 -51.92 -0.40 -0.38 16 12 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 13 C -0.52 -14.40 8.59 -34.44 -0.30 -14.70 16 14 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.11 -1.70 9.36 -39.59 -0.37 -2.07 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 31 H 0.07 1.35 7.38 -51.93 -0.38 0.97 16 32 H 0.33 7.22 8.21 -39.29 -0.32 6.90 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 306.87 15.07 4.62 4.62 Total: -1.00 -28.84 306.87 -9.14 -37.97 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.99 Total: 3.82 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.69 Total: -22.15 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.06 Total: -40.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.84 -9.14 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593182862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.964 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds