Wall clock time and date at job start Sun Mar 29 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 C 1.51269 * 120.84868 * 359.97438 * 7 2 1 9 9 C 1.53224 * 108.53665 * 231.32195 * 8 7 2 10 10 C 1.52959 * 109.40885 * 305.37482 * 9 8 7 11 11 H 1.08999 * 109.41255 * 303.49643 * 10 9 8 12 12 N 1.46497 * 109.41365 * 183.63360 * 10 9 8 13 13 S 1.65606 * 120.00074 * 145.00308 * 12 10 9 14 14 N 1.65605 * 107.21674 * 64.99604 * 13 12 10 15 15 O 1.42091 * 106.40119 * 178.53785 * 13 12 10 16 16 O 1.42104 * 106.40020 * 311.46032 * 13 12 10 17 17 C 1.52964 * 109.81410 * 63.59813 * 10 9 8 18 18 C 1.51270 * 120.85090 * 179.72346 * 7 2 1 19 19 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 20 20 H 1.08996 * 109.62578 * 351.04051 * 8 7 2 21 21 H 1.09003 * 109.61932 * 111.41893 * 8 7 2 22 22 H 1.09006 * 109.48182 * 65.36010 * 9 8 7 23 23 H 1.09000 * 109.48204 * 185.38265 * 9 8 7 24 24 H 0.97002 * 120.00353 * 324.99816 * 12 10 9 25 25 H 0.96992 * 119.99861 * 150.00363 * 14 13 12 26 26 H 0.97001 * 120.00070 * 330.00592 * 14 13 12 27 27 H 1.09000 * 109.48309 * 56.38470 * 17 10 9 28 28 H 1.08996 * 109.48053 * 176.42557 * 17 10 9 29 29 H 1.09003 * 109.62092 * 248.39357 * 18 7 2 30 30 H 1.09002 * 109.62108 * 8.95516 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 6 1.2676 -2.5152 -0.0114 9 6 1.8236 -3.3880 1.1186 10 6 3.3405 -3.5118 0.9658 11 1 3.5737 -3.9123 -0.0207 12 7 3.8613 -4.4160 1.9941 13 16 5.1404 -5.4104 1.6516 14 7 6.4519 -4.4408 1.3643 15 8 5.4241 -6.1252 2.8464 16 8 4.8346 -6.0473 0.4187 17 6 3.9914 -2.1365 1.1230 18 6 3.5170 -1.2167 -0.0120 19 1 -0.4850 0.8401 0.0040 20 1 0.2037 -2.3416 0.1497 21 1 1.4164 -3.0131 -0.9695 22 1 1.5912 -2.9297 2.0799 23 1 1.3710 -4.3784 1.0692 24 1 3.4569 -4.4322 2.8757 25 1 7.3447 -4.7592 1.5696 26 1 6.3271 -3.5543 0.9906 27 1 3.7078 -1.7078 2.0842 28 1 5.0754 -2.2400 1.0766 29 1 3.8734 -1.5979 -0.9690 30 1 3.8988 -0.2084 0.1485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725618337.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:03 Heat of formation + Delta-G solvation = -129.191348 kcal Electronic energy + Delta-G solvation = -15363.972392 eV Core-core repulsion = 12704.694269 eV Total energy + Delta-G solvation = -2659.278123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.17610 -38.15706 -36.91380 -35.40532 -34.04121 -33.02327 -31.38726 -28.61826 -23.90161 -23.28752 -21.32777 -20.77621 -19.39830 -18.37438 -17.93218 -17.26741 -16.80604 -16.37293 -15.93223 -15.01422 -14.61035 -14.21550 -13.99397 -13.94887 -13.27713 -13.20837 -13.10600 -13.08754 -12.75091 -12.64961 -12.32416 -11.95655 -11.80788 -11.60348 -11.34154 -10.90581 -10.74133 -10.51148 -10.16875 -8.13417 -6.07687 -0.29888 1.43833 1.45315 1.52800 2.05612 2.44090 2.62260 3.14682 3.63118 3.93972 4.16506 4.43926 4.50099 4.79739 4.87199 5.01746 5.07863 5.21119 5.27322 5.36695 5.51446 5.65026 5.69587 5.80536 5.86982 6.11889 6.37823 6.41153 6.99668 7.50361 8.97673 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.007448 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.287178 B = 3758.459113 C = 4072.691141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.019 3.981 3 Si 0.945 3.055 4 H -0.301 1.301 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.500 4.500 8 C 0.003 3.997 9 C -0.103 4.103 10 C 0.159 3.841 11 H 0.081 0.919 12 N -1.111 6.111 13 S 2.822 3.178 14 N -1.246 6.246 15 O -1.016 7.016 16 O -1.023 7.023 17 C -0.121 4.121 18 C -0.019 4.019 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.001 0.999 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.425 0.575 25 H 0.429 0.571 26 H 0.422 0.578 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 -4.760 4.137 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.228 1.228 5 H -0.184 1.184 6 H -0.191 1.191 7 C -0.519 4.519 8 C -0.035 4.035 9 C -0.143 4.143 10 C 0.052 3.948 11 H 0.099 0.901 12 N -0.873 5.873 13 S 2.826 3.174 14 N -0.926 5.926 15 O -1.000 7.000 16 O -1.005 7.005 17 C -0.161 4.161 18 C -0.057 4.057 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.020 0.980 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.261 0.739 25 H 0.261 0.739 26 H 0.253 0.747 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.789 -5.771 3.960 13.710 hybrid contribution -0.135 1.622 0.184 1.638 sum 11.654 -4.149 4.144 13.046 Atomic orbital electron populations 1.69978 1.07836 1.27462 1.52081 1.25651 0.95323 1.01913 0.94990 0.85780 0.78274 0.79169 0.79656 1.22818 1.18446 1.19093 1.20681 0.91547 0.91585 1.48132 1.19361 0.97255 0.93687 0.93197 1.21708 0.93776 0.98529 1.00242 1.20717 0.95190 0.89245 0.89599 0.90079 1.55536 1.50150 1.58153 1.23481 1.00467 0.72527 0.72091 0.72333 1.53274 1.23701 1.32637 1.83012 1.93576 1.84979 1.72446 1.48963 1.93602 1.84399 1.74162 1.48295 1.22186 0.98533 0.94926 1.00439 1.19772 0.94381 0.96048 0.95501 0.92953 0.95476 0.98039 0.92692 0.93051 0.73919 0.73926 0.74702 0.91887 0.90901 0.95105 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.43 12.73 21.45 0.27 -53.16 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.94 41.18 26.80 68.60 1.84 43.02 16 4 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.50 -24.58 5.51 -16.17 -0.09 -24.67 16 8 C 0.00 0.16 5.97 30.10 0.18 0.34 16 9 C -0.10 -3.94 5.46 30.66 0.17 -3.78 16 10 C 0.16 5.12 2.71 44.97 0.12 5.25 16 11 H 0.08 2.71 7.50 -2.39 -0.02 2.70 16 12 N -1.11 -28.66 5.52 -169.50 -0.94 -29.60 16 13 S 2.82 72.16 6.72 -56.49 -0.38 71.78 16 14 N -1.25 -21.83 9.58 37.02 0.35 -21.48 16 15 O -1.02 -30.51 18.14 -128.00 -2.32 -32.83 16 16 O -1.02 -34.46 17.47 -128.00 -2.24 -36.69 16 17 C -0.12 -3.83 5.55 30.79 0.17 -3.66 16 18 C -0.02 -0.75 5.62 30.24 0.17 -0.58 16 19 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 20 H 0.03 1.45 7.07 -2.39 -0.02 1.43 16 21 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 22 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.43 9.56 8.83 -96.74 -0.85 8.71 16 25 H 0.43 5.43 8.96 -96.75 -0.87 4.56 16 26 H 0.42 6.53 6.77 -96.74 -0.65 5.88 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 1.68 5.94 -2.39 -0.01 1.67 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.31 5.17 -2.39 -0.01 1.30 16 Total: -1.00 -67.25 253.83 -3.41 -70.66 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -1.18 Total: 13.91 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 1.18 Total: -25.62 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -0.31 Total: -104.23 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -4.56 Total: -69.52 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.84 Total: 43.02 kcal Atomic # 16 Polarization: 72.16 SS G_CDS: -0.38 Total: 71.78 kcal Total: -67.25 -3.41 -70.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725618337.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.531 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds