Wall clock time and date at job start Sun Mar 29 2020 22:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38104 * 125.88279 * 260.24366 * 3 2 1 5 5 C 1.39320 * 107.52688 * 179.84114 * 4 3 2 6 6 C 1.38077 * 107.48002 * 0.42136 * 5 4 3 7 7 C 1.46888 * 125.93286 * 179.76999 * 6 5 4 8 8 O 1.21566 * 120.00129 * 359.96681 * 7 6 5 9 9 O 1.34863 * 119.99721 * 179.97438 * 7 6 5 10 10 C 1.45202 * 116.99419 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46657 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47283 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99466 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00482 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99813 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00420 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46977 * 59.99593 * 16 14 12 18 18 H 1.48498 * 109.46982 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46819 * 300.00132 * 16 14 12 20 20 N 1.36672 * 125.88547 * 80.55580 * 3 2 1 21 21 H 0.96999 * 125.69137 * 359.97438 * 20 3 2 22 22 H 1.07999 * 126.23138 * 0.02562 * 4 3 2 23 23 H 1.08003 * 126.25689 * 180.12148 * 5 4 3 24 24 H 1.08999 * 109.47081 * 299.99816 * 10 9 7 25 25 H 1.09000 * 109.47355 * 60.00403 * 10 9 7 26 26 H 1.09005 * 109.47317 * 300.00234 * 11 10 9 27 27 H 1.09000 * 109.46847 * 60.00168 * 11 10 9 28 28 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3774 0.1906 1.1028 5 6 4.6997 0.1132 0.6710 6 6 4.6787 -0.1134 -0.6909 7 6 5.8549 -0.2579 -1.5589 8 8 6.9722 -0.1788 -1.0867 9 8 5.6950 -0.4782 -2.8798 10 6 6.9016 -0.6114 -3.6765 11 6 6.5228 -0.8558 -5.1386 12 6 7.7750 -0.9947 -5.9655 13 1 8.7441 -0.9161 -5.4952 14 6 7.6836 -1.2212 -7.3224 15 7 6.5036 -1.3164 -7.8951 16 14 9.2358 -1.3926 -8.3475 17 1 10.0363 -2.5384 -7.8457 18 1 8.8682 -1.6300 -9.7665 19 1 10.0369 -0.1465 -8.2448 20 7 3.3692 -0.1807 -1.0923 21 1 3.0627 -0.3322 -2.0000 22 1 3.0456 0.3643 2.1158 23 1 5.5802 0.2168 1.2879 24 1 7.4896 0.3033 -3.6011 25 1 7.4891 -1.4525 -3.3083 26 1 5.9350 -1.7707 -5.2136 27 1 5.9351 -0.0150 -5.5070 28 1 6.4392 -1.4761 -8.8497 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772744836.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:31 Heat of formation + Delta-G solvation = -41.642217 kcal Electronic energy + Delta-G solvation = -14830.088667 eV Core-core repulsion = 12039.163008 eV Total energy + Delta-G solvation = -2790.925659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.53728 -40.95928 -37.78430 -37.59020 -35.45861 -32.59897 -32.24060 -31.08240 -27.31824 -25.40861 -23.15159 -22.46075 -21.54412 -20.59311 -19.10792 -18.27192 -17.61957 -17.48081 -16.53204 -16.00340 -15.71958 -15.02640 -14.84865 -14.60073 -14.39213 -14.26356 -14.04057 -13.85257 -13.34709 -13.14921 -13.07448 -12.62013 -12.59389 -12.04604 -11.59437 -11.50218 -11.43698 -10.61162 -10.23534 -9.53672 -8.27843 -6.40699 -0.27529 0.95974 1.06030 1.41416 1.45007 1.51988 1.61568 1.99262 2.00852 2.32188 2.40030 2.86095 3.07232 3.67125 4.08218 4.15932 4.24015 4.26373 4.69113 4.76933 5.08123 5.19067 5.41177 5.45982 5.46634 5.65987 5.72472 6.00212 6.05774 6.25623 6.61141 6.73366 7.29372 8.84351 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.042153 B = 0.004355 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.084112 B = 6428.228477 C = 7071.865602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.300 3.700 3 C 0.101 3.899 4 C -0.108 4.108 5 C -0.096 4.096 6 C -0.006 4.006 7 C 0.527 3.473 8 O -0.521 6.521 9 O -0.367 6.367 10 C 0.093 3.907 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.067 0.933 14 C 0.006 3.994 15 N -0.928 5.928 16 Si 0.972 3.028 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.265 1.265 20 N -0.501 5.501 21 H 0.436 0.564 22 H 0.197 0.803 23 H 0.179 0.821 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 2.779 16.592 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.015 4.015 3 C -0.019 4.019 4 C -0.136 4.136 5 C -0.122 4.122 6 C -0.122 4.122 7 C 0.372 3.628 8 O -0.410 6.410 9 O -0.283 6.283 10 C 0.020 3.980 11 C -0.007 4.007 12 C -0.588 4.588 13 H 0.086 0.914 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.190 1.190 20 N -0.098 5.098 21 H 0.276 0.724 22 H 0.214 0.786 23 H 0.196 0.804 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.344 2.732 16.307 17.710 hybrid contribution 0.933 -0.254 -1.513 1.795 sum -5.411 2.478 14.794 15.947 Atomic orbital electron populations 1.81364 1.12216 1.10507 1.06577 1.24217 0.90619 0.92724 0.93941 1.15735 0.82760 1.14475 0.88889 1.21636 0.89922 1.03287 0.98737 1.21601 0.99353 1.01034 0.90201 1.19467 0.80963 1.17415 0.94402 1.20317 0.88264 0.73075 0.81105 1.90866 1.25989 1.48213 1.75935 1.86561 1.40137 1.81749 1.19894 1.23233 0.83137 1.01262 0.90372 1.18988 0.97009 0.96477 0.88229 1.21361 0.93098 1.50736 0.93557 0.91446 1.25952 0.99874 0.94280 0.99220 1.70080 1.25370 1.49397 1.11837 0.85393 0.78666 0.79305 0.77074 1.19008 1.20725 1.18998 1.41967 1.04567 1.52497 1.10780 0.72352 0.78585 0.80379 0.91636 0.91642 0.97481 0.97481 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.81 18.54 19.00 0.35 -9.45 15 2 C 0.30 5.44 15.89 88.33 1.40 6.85 15 3 C 0.10 1.58 6.93 39.61 0.27 1.85 15 4 C -0.11 -1.30 10.80 22.50 0.24 -1.06 15 5 C -0.10 -1.58 10.60 22.49 0.24 -1.34 15 6 C -0.01 -0.15 7.07 40.54 0.29 0.14 15 7 C 0.53 16.60 7.94 70.09 0.56 17.16 15 8 O -0.52 -18.64 16.67 19.62 0.33 -18.31 15 9 O -0.37 -13.36 10.23 -57.76 -0.59 -13.96 15 10 C 0.09 3.90 5.42 71.98 0.39 4.29 15 11 C 0.03 1.55 5.35 29.85 0.16 1.71 15 12 C -0.55 -30.19 9.11 25.60 0.23 -29.95 15 13 H 0.07 3.51 7.74 -2.91 -0.02 3.49 15 14 C 0.01 0.32 5.46 84.65 0.46 0.78 15 15 N -0.93 -54.54 13.29 21.44 0.28 -54.25 15 16 Si 0.97 42.67 29.54 68.60 2.03 44.70 15 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 20 N -0.50 -9.47 6.13 -176.00 -1.08 -10.55 15 21 H 0.44 7.71 8.96 -92.71 -0.83 6.88 15 22 H 0.20 0.95 8.06 -2.91 -0.02 0.93 15 23 H 0.18 2.40 8.06 -2.91 -0.02 2.38 15 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.01 0.37 8.14 -2.38 -0.02 0.35 15 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 28 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -65.97 273.97 5.94 -60.03 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 0.37 Total: 1.37 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.25 Total: 0.42 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -0.44 Total: -74.26 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.26 Total: -32.26 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.97 5.94 -60.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772744836.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds