Wall clock time and date at job start Sun Mar 29 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46973 * 2 1 4 4 C 1.50701 * 109.46801 * 119.99257 * 2 1 3 5 5 H 1.08000 * 119.99799 * 120.00470 * 4 2 1 6 6 C 1.37874 * 120.00408 * 300.00138 * 4 2 1 7 7 N 1.31510 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00182 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47008 * 120.00290 * 8 6 4 11 11 H 1.48502 * 109.47214 * 240.00343 * 8 6 4 12 12 O 1.45199 * 109.47442 * 239.99818 * 2 1 3 13 13 C 1.34765 * 117.00278 * 90.00173 * 12 2 1 14 14 O 1.21539 * 119.99661 * 359.97438 * 13 12 2 15 15 C 1.47225 * 120.00130 * 180.02562 * 13 12 2 16 16 C 1.38210 * 126.47594 * 359.97438 * 15 13 12 17 17 N 1.34396 * 108.37382 * 180.02562 * 16 15 13 18 18 H 0.96998 * 125.37134 * 179.97438 * 17 16 15 19 19 C 1.37714 * 109.24090 * 359.75754 * 17 16 15 20 20 C 1.43198 * 125.83082 * 180.26868 * 19 17 16 21 21 N 8.47595 * 107.39713 * 266.75363 * 2 1 3 22 22 C 1.36328 * 108.33523 * 0.40076 * 19 17 16 23 23 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47389 * 300.00239 * 1 2 3 25 25 H 1.09007 * 109.47162 * 60.00750 * 1 2 3 26 26 H 0.97006 * 120.00276 * 179.97438 * 7 6 4 27 27 H 1.07996 * 125.81352 * 359.96324 * 16 15 13 28 28 H 1.08002 * 126.50082 * 179.88107 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.1463 -2.2867 3.6041 10 1 3.1463 -0.1870 4.8166 11 1 1.1658 -1.5863 4.8162 12 8 2.0140 -0.6845 -1.1855 13 6 2.2181 0.0669 -2.2855 14 8 1.9970 1.2616 -2.2548 15 6 2.7077 -0.5596 -3.5245 16 6 3.0005 -1.8977 -3.7085 17 7 3.4185 -2.0698 -4.9742 18 1 3.6884 -2.9149 -5.3664 19 6 3.3985 -0.8577 -5.6275 20 6 3.7696 -0.6349 -6.9925 21 7 4.0642 -0.4580 -8.0752 22 6 2.9680 0.0944 -4.7518 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 0.7079 1.1611 3.4843 27 1 2.9099 -2.6729 -2.9620 28 1 2.8444 1.1474 -4.9574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779208015.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:34 Heat of formation + Delta-G solvation = -36.416954 kcal Electronic energy + Delta-G solvation = -15256.733218 eV Core-core repulsion = 12466.034144 eV Total energy + Delta-G solvation = -2790.699075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.50256 -40.68820 -37.62544 -37.33681 -35.22032 -32.67392 -31.65192 -30.73479 -27.37599 -25.33328 -23.53426 -22.66153 -21.07392 -20.45124 -18.57483 -18.07439 -16.91939 -16.81719 -16.66530 -16.06152 -15.77423 -15.21834 -14.77349 -14.25006 -14.18151 -14.06633 -13.84733 -13.65162 -13.29059 -13.10534 -12.91768 -12.73250 -12.30883 -12.07375 -11.47683 -11.38481 -10.87860 -10.53477 -10.26834 -9.45456 -8.21301 -6.37281 0.33324 0.61436 1.19277 1.48137 1.48543 1.62320 2.06488 2.13950 2.21096 2.46259 2.49599 3.07416 3.10499 3.86138 4.20983 4.25288 4.52935 4.70502 4.88529 4.91681 4.96723 5.26284 5.37299 5.52764 5.57854 5.73486 6.01974 6.18898 6.23452 6.39832 6.70183 7.13163 7.35470 8.86717 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.054488 B = 0.004982 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.754614 B = 5618.547437 C = 5909.075933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.540 4.540 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.983 3.017 9 H -0.258 1.258 10 H -0.281 1.281 11 H -0.275 1.275 12 O -0.353 6.353 13 C 0.520 3.480 14 O -0.567 6.567 15 C -0.248 4.248 16 C 0.154 3.846 17 N -0.494 5.494 18 H 0.449 0.551 19 C 0.048 3.952 20 C 0.308 3.692 21 N -0.442 5.442 22 C -0.054 4.054 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.022 0.978 26 H 0.269 0.731 27 H 0.229 0.771 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -9.747 -11.401 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.022 0.978 4 C -0.577 4.577 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.807 3.193 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.200 1.200 12 O -0.270 6.270 13 C 0.368 3.632 14 O -0.460 6.460 15 C -0.255 4.255 16 C 0.009 3.991 17 N -0.090 5.090 18 H 0.293 0.707 19 C -0.064 4.064 20 C -0.007 4.007 21 N -0.119 5.119 22 C -0.081 4.081 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.245 0.755 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.635 -9.166 -13.033 16.594 hybrid contribution -0.060 0.082 1.176 1.180 sum 4.575 -9.084 -11.858 15.622 Atomic orbital electron populations 1.21988 0.96918 1.00538 1.00629 1.20306 0.91901 0.92071 0.79220 0.97801 1.21348 1.32956 1.13801 0.89635 0.90767 1.25856 0.94893 0.95724 1.02288 1.70044 1.36889 1.23898 1.24987 0.85126 0.78208 0.78463 0.77533 1.18215 1.20645 1.20006 1.86486 1.76578 1.42919 1.20987 1.20886 0.73467 0.84622 0.84256 1.90759 1.51690 1.18179 1.85388 1.18690 1.19013 0.95476 0.92296 1.23064 0.92955 0.96942 0.86115 1.41543 1.48790 1.09359 1.09343 0.70706 1.14739 1.17739 0.87273 0.86599 1.24104 0.92085 0.93912 0.90555 1.81349 1.11610 1.06889 1.12052 1.21104 0.97528 0.99609 0.89894 0.93168 0.90381 0.95937 0.92201 0.75506 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.22 9.33 71.98 0.67 -6.55 15 2 C 0.22 11.70 2.56 29.85 0.08 11.78 15 3 H 0.00 0.25 7.16 -2.39 -0.02 0.24 15 4 C -0.54 -29.46 8.90 25.60 0.23 -29.23 15 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 15 6 C 0.01 0.62 5.30 84.65 0.45 1.07 15 7 N -0.92 -52.31 11.32 21.45 0.24 -52.07 15 8 Si 0.98 41.63 29.54 68.60 2.03 43.66 15 9 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 12 O -0.35 -15.95 9.70 -56.76 -0.55 -16.50 15 13 C 0.52 21.45 7.93 70.18 0.56 22.00 15 14 O -0.57 -27.83 16.18 19.71 0.32 -27.51 15 15 C -0.25 -6.92 6.13 -20.12 -0.12 -7.04 15 16 C 0.15 2.58 11.76 84.29 0.99 3.57 15 17 N -0.49 -5.60 6.02 -186.44 -1.12 -6.72 15 18 H 0.45 1.31 8.96 -92.71 -0.83 0.48 15 19 C 0.05 0.84 6.90 39.02 0.27 1.11 15 20 C 0.31 6.02 15.88 88.33 1.40 7.42 15 21 N -0.44 -10.53 18.54 19.00 0.35 -10.18 15 22 C -0.05 -1.29 10.59 22.62 0.24 -1.05 15 23 H 0.05 2.33 8.14 -2.39 -0.02 2.32 15 24 H 0.08 4.27 6.07 -2.39 -0.01 4.26 15 25 H 0.02 1.05 8.14 -2.38 -0.02 1.03 15 26 H 0.27 14.29 8.31 -92.70 -0.77 13.52 15 27 H 0.23 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.16 3.79 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -71.91 268.59 6.41 -65.51 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 0.38 Total: 0.73 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.76 Total: 3.08 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -0.53 Total: -68.97 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.23 Total: -44.01 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -71.91 6.41 -65.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779208015.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.089 kcal (2) G-P(sol) polarization free energy of solvation -71.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds