Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99882 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00057 * 179.97438 * 13 12 11 16 16 H 1.08993 * 115.54960 * 325.58299 * 15 13 12 17 17 C 1.52996 * 117.49742 * 179.91271 * 15 13 12 18 18 C 1.53001 * 117.49669 * 111.25251 * 15 13 12 19 19 F 1.39900 * 117.49855 * 214.97914 * 18 15 13 20 20 F 1.39905 * 117.49892 * 0.02562 * 18 15 13 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 27 27 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 28 28 H 1.09000 * 117.50463 * 359.97438 * 17 15 13 29 29 H 1.09003 * 117.49902 * 145.00106 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8290 -8.5262 0.0019 16 1 3.7586 -8.4049 -0.5539 17 6 2.1830 -9.9131 0.0041 18 6 2.8692 -9.3860 1.2668 19 9 4.0963 -9.9568 1.6212 20 9 2.0505 -9.0029 2.3347 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.8540 -5.0446 0.8914 27 1 0.8534 -5.0451 -0.8886 28 1 1.0941 -9.9613 0.0059 29 1 2.6878 -10.7043 -0.5503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -172.473095 kcal Electronic energy + Delta-G solvation = -15848.878595 eV Core-core repulsion = 12601.590497 eV Total energy + Delta-G solvation = -3247.288098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.09962 -47.77145 -40.55674 -37.24787 -35.79435 -34.35086 -31.74894 -27.29775 -25.25755 -23.02810 -22.93159 -20.82033 -20.60053 -18.73113 -17.62996 -17.35593 -16.66860 -16.51252 -16.27273 -15.58790 -14.40835 -14.19061 -14.06828 -13.93331 -13.76203 -13.70978 -12.97607 -12.61126 -12.37844 -11.78480 -11.61491 -11.09226 -10.93222 -10.78232 -10.55833 -10.48319 -10.16989 -9.92042 -9.91142 -8.63998 -8.37489 -6.40963 -4.11035 1.62481 2.34395 2.57809 2.90284 3.42638 3.44544 3.63407 3.64870 4.06052 4.11207 4.50643 4.61403 4.96089 5.10116 5.29074 5.35114 5.40569 5.42105 5.81475 6.24658 6.35127 6.59777 6.77795 7.28057 7.39667 7.62819 8.13179 8.40568 8.82519 9.61359 10.99761 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.058147 B = 0.004001 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.426693 B = 6996.960495 C = 7169.932667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.604 4.604 8 H 0.051 0.949 9 C 0.011 3.989 10 C -0.103 4.103 11 C 0.068 3.932 12 O -0.347 6.347 13 C 0.488 3.512 14 O -0.496 6.496 15 C -0.170 4.170 16 H 0.162 0.838 17 C -0.139 4.139 18 C 0.227 3.773 19 F -0.150 7.150 20 F -0.149 7.149 21 H 0.269 0.731 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.138 0.862 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -19.862 -0.424 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.070 0.930 9 C -0.026 4.026 10 C -0.140 4.140 11 C -0.005 4.005 12 O -0.263 6.263 13 C 0.330 3.670 14 O -0.384 6.384 15 C -0.190 4.190 16 H 0.180 0.820 17 C -0.177 4.177 18 C 0.190 3.810 19 F -0.131 7.131 20 F -0.129 7.129 21 H 0.079 0.921 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.777 -18.207 -0.370 19.106 hybrid contribution 0.228 -1.644 0.196 1.672 sum 6.005 -19.852 -0.174 20.741 Atomic orbital electron populations 1.70791 1.06896 1.30631 1.46387 1.25903 0.96540 1.02843 0.93642 0.83514 0.74863 0.75158 0.76574 1.20715 1.21363 1.21377 1.21984 0.94407 0.91644 1.56139 0.93039 1.19182 0.94469 0.92494 0.96448 1.21640 0.99701 0.90317 1.02379 1.23612 0.91167 0.83354 1.02379 1.86476 1.42583 1.14656 1.82627 1.21898 0.87236 0.84485 0.73408 1.90689 1.16252 1.86748 1.44678 1.23236 1.03578 0.90765 1.01384 0.82029 1.24445 1.04245 0.94513 0.94467 1.19660 0.80011 1.00724 0.80580 1.93077 1.42264 1.84531 1.93201 1.93107 1.70692 1.91207 1.57914 0.92091 0.97077 0.97097 0.91822 0.91831 0.91254 0.91215 0.84379 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.65 55.43 0.76 -27.27 15 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 15 3 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 15 7 C -0.60 -17.23 9.11 -34.44 -0.31 -17.54 15 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 15 9 C 0.01 0.28 4.28 -27.88 -0.12 0.16 15 10 C -0.10 -2.14 5.53 -26.73 -0.15 -2.28 15 11 C 0.07 1.23 5.47 37.16 0.20 1.43 15 12 O -0.35 -5.71 10.22 -39.26 -0.40 -6.11 15 13 C 0.49 7.12 7.37 36.01 0.27 7.38 15 14 O -0.50 -8.37 16.01 -18.75 -0.30 -8.67 15 15 C -0.17 -1.67 6.28 -91.77 -0.58 -2.24 15 16 H 0.16 1.14 8.14 -51.93 -0.42 0.72 15 17 C -0.14 -1.01 10.02 -26.69 -0.27 -1.28 15 18 C 0.23 2.32 5.20 -26.69 -0.14 2.18 15 19 F -0.15 -1.51 17.60 2.25 0.04 -1.47 15 20 F -0.15 -1.94 17.13 2.25 0.04 -1.91 15 21 H 0.27 8.21 7.22 -40.82 -0.29 7.92 15 22 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 15 23 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 15 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.07 1.27 8.13 -51.93 -0.42 0.85 15 27 H 0.07 1.24 8.13 -51.93 -0.42 0.82 15 28 H 0.14 1.07 7.67 -51.93 -0.40 0.67 15 29 H 0.14 0.53 8.14 -51.93 -0.42 0.11 15 LS Contribution 272.05 15.07 4.10 4.10 Total: -1.00 -32.44 272.05 -5.30 -37.74 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -3.26 Total: -4.70 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.19 Total: -11.87 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.76 Total: -27.27 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.70 Total: -14.79 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.44 -5.30 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.732 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds