Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99882 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00057 * 179.97438 * 13 12 11 16 16 H 1.08993 * 115.54960 * 325.58299 * 15 13 12 17 17 C 1.52996 * 117.49742 * 179.91271 * 15 13 12 18 18 C 1.53001 * 117.49669 * 111.25251 * 15 13 12 19 19 F 1.39900 * 117.49855 * 214.97914 * 18 15 13 20 20 F 1.39905 * 117.49892 * 0.02562 * 18 15 13 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 27 27 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 28 28 H 1.09000 * 117.50463 * 359.97438 * 17 15 13 29 29 H 1.09003 * 117.49902 * 145.00106 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8290 -8.5262 0.0019 16 1 3.7586 -8.4049 -0.5539 17 6 2.1830 -9.9131 0.0041 18 6 2.8692 -9.3860 1.2668 19 9 4.0963 -9.9568 1.6212 20 9 2.0505 -9.0029 2.3347 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.8540 -5.0446 0.8914 27 1 0.8534 -5.0451 -0.8886 28 1 1.0941 -9.9613 0.0059 29 1 2.6878 -10.7043 -0.5503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -191.516049 kcal Electronic energy + Delta-G solvation = -15849.704360 eV Core-core repulsion = 12601.590497 eV Total energy + Delta-G solvation = -3248.113863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.085 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.91396 -48.60060 -41.77188 -38.43592 -36.75627 -36.32687 -33.69915 -29.00818 -26.58945 -24.80776 -23.71382 -22.51038 -21.77077 -19.70587 -19.02123 -18.55171 -18.27502 -17.69072 -17.24123 -16.66073 -15.71815 -15.65072 -15.35638 -15.23360 -14.83657 -14.79633 -14.55998 -14.03847 -13.67449 -13.34383 -12.80434 -12.71552 -12.43693 -12.21552 -12.16410 -11.95677 -11.80022 -11.58560 -11.27591 -10.77070 -10.57578 -8.72693 -6.44119 0.57948 1.26356 1.53537 1.61886 1.81342 1.83321 2.05079 2.56138 2.93721 3.12753 3.17778 3.35035 3.64676 3.83854 3.87573 4.23230 4.33747 4.53013 4.58960 4.63900 4.71291 4.84278 5.16557 5.33899 5.36685 5.92427 6.13799 6.40895 6.52571 7.38116 8.68515 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.058147 B = 0.004001 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.426693 B = 6996.960495 C = 7169.932667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.621 4.621 8 H 0.056 0.944 9 C 0.010 3.990 10 C -0.089 4.089 11 C 0.077 3.923 12 O -0.351 6.351 13 C 0.483 3.517 14 O -0.523 6.523 15 C -0.173 4.173 16 H 0.194 0.806 17 C -0.104 4.104 18 C 0.208 3.792 19 F -0.150 7.150 20 F -0.173 7.173 21 H 0.255 0.745 22 H -0.007 1.007 23 H -0.004 1.004 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -20.927 -1.090 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.659 4.659 8 H 0.075 0.925 9 C -0.027 4.027 10 C -0.127 4.127 11 C 0.004 3.996 12 O -0.267 6.267 13 C 0.326 3.674 14 O -0.413 6.413 15 C -0.192 4.192 16 H 0.211 0.789 17 C -0.141 4.141 18 C 0.171 3.829 19 F -0.130 7.130 20 F -0.153 7.153 21 H 0.065 0.935 22 H 0.012 0.988 23 H 0.015 0.985 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.500 -19.314 -1.036 20.745 hybrid contribution -0.312 -1.399 0.416 1.493 sum 7.188 -20.713 -0.620 21.934 Atomic orbital electron populations 1.70926 1.08026 1.29908 1.48595 1.27528 0.96590 1.07057 0.92554 0.82901 0.74088 0.70761 0.78179 1.20947 1.19304 1.19130 1.22445 0.94981 0.92995 1.55446 0.92530 1.19108 0.94954 0.93823 0.94845 1.21345 0.98540 0.90066 1.02731 1.23205 0.90854 0.83330 1.02207 1.86458 1.41984 1.15225 1.83032 1.22831 0.87796 0.84677 0.72081 1.90678 1.17769 1.86933 1.45876 1.23440 1.04307 0.89578 1.01917 0.78871 1.24688 1.04247 0.93603 0.91558 1.20025 0.80387 1.02047 0.80439 1.93077 1.42278 1.84423 1.93232 1.93056 1.71435 1.91617 1.59231 0.93519 0.98834 0.98524 0.91136 0.91669 0.91881 0.91075 0.84828 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.65 21.45 0.29 -58.33 15 2 C -0.04 -2.33 5.46 84.65 0.46 -1.87 15 3 Si 1.12 50.01 29.90 68.60 2.05 52.07 15 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 15 7 C -0.62 -35.54 9.11 25.60 0.23 -35.31 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.01 0.51 4.28 29.85 0.13 0.64 15 10 C -0.09 -3.70 5.53 30.59 0.17 -3.53 15 11 C 0.08 2.82 5.47 71.98 0.39 3.21 15 12 O -0.35 -11.20 10.22 -51.43 -0.53 -11.73 15 13 C 0.48 13.51 7.37 71.24 0.53 14.03 15 14 O -0.52 -17.42 16.01 21.96 0.35 -17.07 15 15 C -0.17 -2.94 6.28 -11.54 -0.07 -3.01 15 16 H 0.19 1.99 8.14 -2.39 -0.02 1.97 15 17 C -0.10 -1.16 10.02 30.62 0.31 -0.85 15 18 C 0.21 3.81 5.20 30.62 0.16 3.97 15 19 F -0.15 -2.68 17.60 44.97 0.79 -1.89 15 20 F -0.17 -4.43 17.13 44.97 0.77 -3.66 15 21 H 0.26 16.15 7.22 -92.71 -0.67 15.48 15 22 H -0.01 -0.37 8.01 -2.39 -0.02 -0.39 15 23 H 0.00 -0.19 8.01 -2.38 -0.02 -0.21 15 24 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.06 2.36 8.13 -2.39 -0.02 2.34 15 27 H 0.07 2.55 8.13 -2.39 -0.02 2.53 15 28 H 0.13 1.72 7.67 -2.39 -0.02 1.70 15 29 H 0.18 0.41 8.14 -2.39 -0.02 0.39 15 Total: -1.00 -70.86 272.05 7.29 -63.57 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: 1.26 Total: -0.23 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 2.30 Total: -22.72 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.29 Total: -58.33 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.17 Total: -28.80 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.56 Total: -5.55 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.07 kcal Total: -70.86 7.29 -63.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.950 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds