Wall clock time and date at job start Sun Mar 29 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 H 1.09001 * 109.47324 * 305.00430 * 3 2 1 5 5 C 1.50697 * 109.47394 * 184.99692 * 3 2 1 6 6 H 1.07998 * 120.00250 * 240.00045 * 5 3 2 7 7 C 1.37875 * 119.99758 * 60.00436 * 5 3 2 8 8 N 1.31513 * 120.00130 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47300 * 59.99692 * 9 7 5 11 11 H 1.48504 * 109.46953 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46944 * 299.99445 * 9 7 5 13 13 O 1.45203 * 109.46672 * 64.99563 * 3 2 1 14 14 C 1.34228 * 117.00467 * 269.99985 * 13 3 2 15 15 O 1.20822 * 119.99619 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99917 * 180.02562 * 14 13 3 17 17 H 1.08997 * 115.55330 * 34.33221 * 16 14 13 18 18 C 1.53006 * 117.49602 * 179.97438 * 16 14 13 19 19 C 1.52997 * 117.51636 * 248.62515 * 16 14 13 20 20 F 1.39903 * 117.49597 * 145.03234 * 19 16 14 21 21 F 1.39898 * 117.50066 * 0.02562 * 19 16 14 22 22 H 1.09002 * 109.47177 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47633 * 300.00073 * 1 2 3 24 24 H 1.09012 * 109.46966 * 59.99954 * 1 2 3 25 25 H 1.09002 * 109.47342 * 239.99909 * 2 1 3 26 26 H 1.09000 * 109.47265 * 120.00329 * 2 1 3 27 27 H 0.96997 * 120.00044 * 180.02562 * 8 7 5 28 28 H 1.08990 * 117.50086 * 215.00102 * 18 16 14 29 29 H 1.09004 * 117.49623 * 0.02985 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0050 0.8801 -1.3810 10 1 6.5967 0.1454 -0.2342 11 1 6.3980 0.2158 -2.6497 12 1 6.5005 2.2801 -1.3806 13 8 1.6558 2.0916 1.2407 14 6 0.4726 2.7254 1.2560 15 8 -0.2193 2.7370 0.2656 16 6 0.0074 3.4225 2.5084 17 1 0.7919 3.8809 3.1104 18 6 -1.3499 4.1272 2.4620 19 6 -1.1909 2.8233 3.2473 20 9 -1.1958 2.9057 4.6439 21 9 -1.7708 1.6696 2.7088 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8294 -0.0617 -2.9494 28 1 -1.4583 5.0489 3.0336 29 1 -1.9065 4.0863 1.5256 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341097.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:33 Heat of formation + Delta-G solvation = -179.325554 kcal Electronic energy + Delta-G solvation = -16986.023147 eV Core-core repulsion = 13738.437904 eV Total energy + Delta-G solvation = -3247.585243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.085 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.85270 -48.53466 -41.53378 -38.21041 -36.53317 -35.54371 -33.37658 -29.47863 -26.63708 -24.93080 -23.65131 -22.33841 -21.23563 -19.58711 -18.87588 -18.28711 -18.01679 -17.21468 -17.03764 -16.70116 -16.07925 -15.18030 -14.99222 -14.84057 -14.77001 -14.60197 -14.07435 -13.57937 -13.37732 -13.23885 -13.11820 -12.81911 -12.57805 -12.40461 -12.15644 -11.81778 -11.61468 -11.42359 -11.16050 -10.87323 -10.54860 -8.28564 -6.45966 0.86112 1.41687 1.45660 1.53007 1.71802 1.91713 2.20822 2.38778 3.01062 3.02961 3.42212 3.46858 3.90495 4.32958 4.36470 4.39980 4.54516 4.56642 4.77424 4.79599 5.05787 5.16958 5.31717 5.48977 5.62924 5.91950 6.07191 6.56832 6.87611 7.25078 8.78049 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.006775 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.584841 B = 4131.810377 C = 4381.475268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.012 0.988 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.267 1.267 13 O -0.359 6.359 14 C 0.473 3.527 15 O -0.527 6.527 16 C -0.179 4.179 17 H 0.185 0.815 18 C -0.103 4.103 19 C 0.211 3.789 20 F -0.150 7.150 21 F -0.170 7.170 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.184 0.816 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 6.385 9.726 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.030 0.970 5 C -0.590 4.590 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.192 1.192 13 O -0.275 6.275 14 C 0.316 3.684 15 O -0.417 6.417 16 C -0.199 4.199 17 H 0.203 0.797 18 C -0.140 4.140 19 C 0.174 3.826 20 F -0.130 7.130 21 F -0.151 7.151 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.202 0.798 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.147 6.217 9.255 13.243 hybrid contribution 0.774 -0.552 -0.386 1.026 sum -6.373 5.665 8.869 12.303 Atomic orbital electron populations 1.21739 0.96304 1.00648 1.00221 1.21888 0.94418 0.98214 1.02347 1.20456 0.94738 0.89232 0.78345 0.96984 1.21295 0.90364 1.40344 1.07045 0.91485 1.25794 1.04267 0.93741 0.94285 1.69998 1.37572 1.37699 1.09859 0.85254 0.77591 0.78857 0.77842 1.19018 1.20250 1.19204 1.86444 1.35532 1.62622 1.42920 1.22719 0.80044 0.76327 0.89284 1.90612 1.55688 1.58670 1.36723 1.23422 0.97090 1.03543 0.95852 0.79724 1.24645 0.92126 0.94826 1.02393 1.19961 1.00143 0.86748 0.75736 1.93061 1.96688 1.96227 1.27020 1.93043 1.85136 1.51967 1.84952 0.92204 0.94459 0.94259 0.89298 0.93824 0.91953 0.79829 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.56 71.98 0.62 -5.34 15 2 C -0.13 -6.69 5.49 30.59 0.17 -6.52 15 3 C 0.23 12.27 2.25 29.85 0.07 12.34 15 4 H 0.01 0.75 7.16 -2.39 -0.02 0.73 15 5 C -0.55 -31.23 8.90 25.60 0.23 -31.01 15 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 15 7 C 0.02 1.05 5.29 84.65 0.45 1.50 15 8 N -0.91 -51.98 11.29 21.45 0.24 -51.74 15 9 Si 0.98 42.49 29.54 68.60 2.03 44.51 15 10 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 15 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 13 O -0.36 -17.20 9.81 -51.40 -0.50 -17.70 15 14 C 0.47 19.16 5.83 71.24 0.42 19.57 15 15 O -0.53 -23.76 13.40 21.98 0.29 -23.47 15 16 C -0.18 -4.81 6.28 -11.54 -0.07 -4.88 15 17 H 0.19 3.79 8.14 -2.39 -0.02 3.77 15 18 C -0.10 -1.92 10.02 30.61 0.31 -1.62 15 19 C 0.21 5.39 5.20 30.61 0.16 5.55 15 20 F -0.15 -3.54 17.60 44.97 0.79 -2.75 15 21 F -0.17 -5.52 16.74 44.97 0.75 -4.77 15 22 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.04 1.64 5.66 -2.39 -0.01 1.62 15 24 H 0.04 1.85 7.80 -2.38 -0.02 1.83 15 25 H 0.09 4.93 5.95 -2.39 -0.01 4.92 15 26 H 0.04 2.17 8.14 -2.39 -0.02 2.15 15 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 15 28 H 0.18 1.62 8.14 -2.39 -0.02 1.60 15 29 H 0.13 2.71 7.67 -2.38 -0.02 2.69 15 Total: -1.00 -66.19 260.44 7.11 -59.08 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.17 Total: 7.24 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 2.34 Total: -10.41 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.24 Total: -51.74 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.21 Total: -41.17 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.54 Total: -7.52 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.19 7.11 -59.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341097.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.242 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds