Wall clock time and date at job start Sun Mar 29 2020 21:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.52992 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47331 * 59.99613 * 3 2 1 6 6 C 1.46902 * 110.99745 * 59.99808 * 5 3 2 7 7 C 1.50706 * 109.46823 * 179.97438 * 6 5 3 8 8 H 1.07993 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99637 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00124 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47289 * 90.00170 * 11 9 7 13 13 H 1.48504 * 109.47441 * 210.00023 * 11 9 7 14 14 H 1.48502 * 109.47658 * 330.00043 * 11 9 7 15 15 C 1.50706 * 109.46826 * 299.99881 * 3 2 1 16 16 C 1.38237 * 119.99744 * 150.00542 * 15 3 2 17 17 C 1.38235 * 119.99712 * 180.02562 * 16 15 3 18 18 C 1.38234 * 120.00220 * 359.94731 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00223 * 330.01753 * 15 3 2 21 21 H 1.09000 * 109.47611 * 300.00107 * 1 2 3 22 22 H 1.09001 * 109.47186 * 60.00133 * 1 2 3 23 23 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47173 * 239.99736 * 2 1 3 25 25 H 1.09001 * 109.46660 * 119.99862 * 2 1 3 26 26 H 1.09000 * 109.47055 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47313 * 299.99349 * 4 3 2 28 28 H 1.09000 * 109.47547 * 59.99968 * 4 3 2 29 29 H 1.00905 * 111.00200 * 296.05136 * 5 3 2 30 30 H 1.08992 * 109.47437 * 299.99967 * 6 5 3 31 31 H 1.09005 * 109.46910 * 60.00522 * 6 5 3 32 32 H 0.97000 * 120.00010 * 179.97438 * 10 9 7 33 33 H 1.08005 * 120.00088 * 359.97438 * 16 15 3 34 34 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 35 35 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 37 37 H 1.07998 * 119.99975 * 0.02562 * 20 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 1.5502 2.1351 1.1993 6 6 2.0212 1.4689 2.4210 7 6 1.5005 2.2064 3.6278 8 1 0.8814 3.0819 3.5000 9 6 1.8147 1.7631 4.8951 10 7 2.5683 0.6966 5.0507 11 14 1.1688 2.6766 6.3908 12 1 -0.1452 2.1099 6.7877 13 1 2.1301 2.5307 7.5133 14 1 1.0079 4.1155 6.0609 15 6 1.5376 2.1529 -1.2305 16 6 1.3072 3.5155 -1.1964 17 6 0.8459 4.1670 -2.3249 18 6 0.6160 3.4561 -3.4879 19 6 0.8417 2.0927 -3.5207 20 6 1.3069 1.4419 -2.3933 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.9332 2.4702 0.0002 27 1 3.9329 0.9289 0.8909 28 1 3.9337 0.9285 -0.8891 29 1 0.5437 2.2051 1.1908 30 1 1.6578 0.4415 2.4379 31 1 3.1111 1.4692 2.4379 32 1 2.7896 0.3849 5.9422 33 1 1.4869 4.0709 -0.2877 34 1 0.6656 5.2314 -2.2981 35 1 0.2560 3.9652 -4.3698 36 1 0.6579 1.5365 -4.4281 37 1 1.4863 0.3772 -2.4199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839541115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:23 Heat of formation + Delta-G solvation = 0.466149 kcal Electronic energy + Delta-G solvation = -16591.099286 eV Core-core repulsion = 14139.091683 eV Total energy + Delta-G solvation = -2452.007603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91870 -38.25187 -35.12239 -32.95225 -31.93862 -31.25100 -30.04505 -28.18378 -25.01907 -24.35419 -22.99474 -22.80663 -19.86732 -18.85763 -17.61916 -16.73648 -16.47168 -15.94460 -15.79114 -15.18816 -15.04429 -14.61205 -14.18782 -14.04753 -13.87605 -13.55092 -13.24420 -12.98945 -12.87107 -12.73624 -12.60697 -12.40922 -12.05162 -11.94247 -11.88768 -11.52157 -11.24100 -11.22899 -10.61441 -9.66639 -9.48287 -8.99123 -8.20097 -6.29567 0.58050 0.64659 1.40145 1.41359 1.52947 2.40513 3.01706 3.13336 3.53624 3.78715 4.02375 4.17923 4.24350 4.29974 4.38318 4.43398 4.67043 4.68521 4.75678 4.84287 4.89585 4.95940 5.06997 5.13232 5.19438 5.26584 5.31950 5.34232 5.36272 5.47245 5.63555 5.72071 5.76787 5.90921 6.10424 6.25813 6.55055 6.78909 6.94549 7.40601 8.91041 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.006364 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.727235 B = 4398.685232 C = 4698.247475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.147 3.853 4 C -0.128 4.128 5 N -0.673 5.673 6 C 0.210 3.790 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.967 3.033 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.123 4.123 21 H 0.033 0.967 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.330 0.670 30 H -0.030 1.030 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 1.888 -16.649 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.055 3.945 4 C -0.185 4.185 5 N -0.303 5.303 6 C 0.083 3.917 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.194 4.194 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.142 4.142 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.149 0.851 30 H -0.012 1.012 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.107 2.256 -16.504 16.945 hybrid contribution -0.517 -0.601 1.405 1.614 sum -3.624 1.655 -15.099 15.615 Atomic orbital electron populations 1.21741 0.95209 1.01862 1.01449 1.22183 0.97025 0.97622 1.01778 1.19842 0.94870 0.90987 0.88777 1.21784 0.93942 1.01628 1.01180 1.60762 1.15253 1.53094 1.01231 1.19215 0.94527 0.91273 0.86685 1.21584 1.31516 1.12430 0.91702 0.92278 1.25860 0.95396 0.95928 1.02253 1.70083 1.38492 1.25250 1.23479 0.85414 0.78074 0.79056 0.78237 1.19840 1.20770 1.19095 1.19751 0.99124 0.94067 0.94255 1.21181 0.99034 0.94511 0.98803 1.21390 0.99695 1.00698 0.93027 1.21434 1.00193 0.94605 0.98361 1.21395 0.99407 0.95018 0.98490 1.21242 1.00008 1.00417 0.92499 0.94795 0.91251 0.91905 0.89768 0.93939 0.93020 0.94182 0.90765 0.85144 1.01218 0.97652 0.92769 0.86799 0.84854 0.83817 0.83723 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.25 71.98 0.67 -3.87 16 2 C -0.15 -4.92 4.11 30.60 0.13 -4.80 16 3 C 0.15 5.22 0.56 2.78 0.00 5.22 16 4 C -0.13 -4.58 8.22 71.98 0.59 -3.98 16 5 N -0.67 -29.16 4.86 -477.87 -2.32 -31.49 16 6 C 0.21 11.22 4.65 85.56 0.40 11.62 16 7 C -0.53 -30.79 9.32 25.60 0.24 -30.55 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.00 0.21 5.46 84.66 0.46 0.68 16 10 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 11 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C -0.07 -2.18 4.01 -19.86 -0.08 -2.26 16 16 C -0.12 -3.58 9.31 22.27 0.21 -3.37 16 17 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 18 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 19 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 20 C -0.12 -3.08 7.77 22.27 0.17 -2.91 16 21 H 0.03 1.21 6.76 -2.39 -0.02 1.20 16 22 H 0.07 1.94 6.17 -2.39 -0.01 1.93 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 2.32 6.51 -2.39 -0.02 2.31 16 25 H 0.04 1.69 6.40 -2.39 -0.02 1.68 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.62 6.40 -2.39 -0.02 1.60 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.33 14.18 7.02 -89.69 -0.63 13.55 16 30 H -0.03 -1.70 6.30 -2.39 -0.02 -1.71 16 31 H 0.01 0.32 6.30 -2.38 -0.02 0.30 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.11 3.93 7.40 -2.91 -0.02 3.91 16 34 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.13 2.91 6.16 -2.91 -0.02 2.89 16 Total: -1.00 -63.82 291.96 3.87 -59.95 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.42 Total: 22.99 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.46 Total: -41.99 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.04 Total: -87.94 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.82 3.87 -59.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839541115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.418 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds