Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00055 * 2 1 4 4 H 1.48499 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47263 * 300.00608 * 3 2 1 6 6 H 1.48505 * 109.46904 * 60.00618 * 3 2 1 7 7 C 1.37876 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00213 * 359.97438 * 7 2 1 10 10 S 1.81406 * 109.47099 * 180.02562 * 9 7 2 11 11 O 1.42093 * 108.58144 * 65.50774 * 10 9 7 12 12 O 1.42099 * 108.57404 * 294.48129 * 10 9 7 13 13 C 1.81401 * 101.92055 * 179.97438 * 10 9 7 14 14 C 1.52997 * 109.47149 * 179.97438 * 13 10 9 15 15 O 1.42895 * 109.47503 * 180.02562 * 14 13 10 16 16 C 1.42902 * 114.00370 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49859 * 218.61728 * 16 15 14 18 18 C 1.52996 * 60.00224 * 252.51152 * 17 16 15 19 19 H 0.96998 * 120.00282 * 359.97438 * 1 2 3 20 20 H 1.08991 * 109.47363 * 60.00037 * 9 7 2 21 21 H 1.09006 * 109.47017 * 299.99487 * 9 7 2 22 22 H 1.09002 * 109.47085 * 299.99728 * 13 10 9 23 23 H 1.09001 * 109.47417 * 59.99854 * 13 10 9 24 24 H 1.09002 * 109.47153 * 299.99990 * 14 13 10 25 25 H 1.08998 * 109.47533 * 59.99620 * 14 13 10 26 26 H 1.08998 * 115.54790 * 4.33182 * 16 15 14 27 27 H 1.08993 * 117.49864 * 0.02562 * 17 16 15 28 28 H 1.09005 * 117.49522 * 145.02185 * 17 16 15 29 29 H 1.08999 * 117.50037 * 252.51220 * 18 17 16 30 30 H 1.08999 * 117.51713 * 107.48427 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1484 -3.8592 1.2251 12 8 3.1482 -3.8592 -1.2264 13 6 1.3242 -5.3161 0.0003 14 6 2.1570 -6.5996 -0.0003 15 8 1.2862 -7.7325 -0.0003 16 6 1.9669 -8.9890 -0.0014 17 6 1.3706 -10.1148 -0.8485 18 6 1.2706 -10.1703 0.6772 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8902 21 1 0.6247 -2.5571 0.8898 22 1 0.6957 -5.2908 0.8905 23 1 0.6951 -5.2913 -0.8895 24 1 2.7852 -6.6247 -0.8907 25 1 2.7865 -6.6247 0.8892 26 1 3.0531 -8.9352 0.0722 27 1 0.4593 -9.8970 -1.4053 28 1 2.0646 -10.8019 -1.3327 29 1 1.8986 -10.8940 1.1967 30 1 0.2933 -9.9891 1.1247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899502346.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = -120.997037 kcal Electronic energy + Delta-G solvation = -14333.304531 eV Core-core repulsion = 11642.088989 eV Total energy + Delta-G solvation = -2691.215542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59558 -37.81945 -36.90662 -36.26649 -35.38146 -32.32050 -31.03434 -25.85318 -24.23836 -23.30064 -22.96444 -19.71092 -18.89916 -18.46109 -17.34036 -17.26993 -16.89200 -16.32373 -16.27429 -15.82576 -15.04434 -14.45235 -14.05542 -13.94221 -13.83851 -13.37771 -12.99136 -12.90593 -12.73038 -12.61147 -12.47554 -12.41967 -12.14448 -11.93368 -11.71226 -11.39346 -10.93093 -10.76647 -10.16310 -8.39980 -6.56029 -0.78768 1.38710 1.39537 1.53797 2.12536 2.28548 2.36748 2.88556 2.94058 3.00205 3.27169 3.58092 3.79317 3.86968 4.05391 4.15050 4.29564 4.47514 4.48197 4.75154 4.76839 4.80258 4.80404 5.00582 5.22793 5.38534 5.76057 6.11433 6.54523 7.14798 8.72828 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.069961 B = 0.004984 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.126721 B = 5616.341968 C = 5762.773835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.064 0.936 9 C -0.422 4.422 10 S 2.430 3.570 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.608 4.608 14 C 0.071 3.929 15 O -0.367 6.367 16 C -0.018 4.018 17 C -0.184 4.184 18 C -0.177 4.177 19 H 0.273 0.727 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.155 0.845 23 H 0.155 0.845 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -16.025 -0.020 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.082 0.918 9 C -0.555 4.555 10 S 2.618 3.382 11 O -0.981 6.981 12 O -0.981 6.981 13 C -0.737 4.737 14 C -0.006 4.006 15 O -0.286 6.286 16 C -0.076 4.076 17 C -0.221 4.221 18 C -0.214 4.214 19 H 0.082 0.918 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.173 0.827 23 H 0.173 0.827 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.146 0.854 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.783 -15.924 -0.021 16.024 hybrid contribution -0.589 0.908 -0.009 1.083 sum 1.194 -15.016 -0.029 15.063 Atomic orbital electron populations 1.70018 1.07402 1.28752 1.48557 1.25807 0.95967 1.03041 0.93108 0.85415 0.79086 0.78152 0.78720 1.18897 1.19245 1.19233 1.20826 0.93133 0.90779 1.55344 0.91831 1.27581 1.10648 1.10528 1.06749 1.07506 0.78698 0.78435 0.73607 1.93439 1.70975 1.86894 1.46781 1.93440 1.70985 1.86895 1.46774 1.30378 1.16377 1.12687 1.14253 1.22193 0.91864 0.83861 1.02674 1.87821 1.33132 1.13088 1.94571 1.23119 0.96442 0.80734 1.07299 1.23484 1.03957 1.00430 0.94194 1.23440 1.03128 0.99227 0.95609 0.91768 0.89531 0.89533 0.82680 0.82708 0.90815 0.90747 0.85435 0.88848 0.86035 0.85898 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 13.29 21.45 0.28 -51.16 16 2 C 0.02 1.29 5.46 84.66 0.46 1.76 16 3 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.56 -31.35 9.13 25.60 0.23 -31.12 16 8 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 9 C -0.42 -19.91 5.56 71.23 0.40 -19.52 16 10 S 2.43 96.01 4.64 -56.49 -0.26 95.75 16 11 O -0.98 -44.15 18.10 -127.37 -2.30 -46.46 16 12 O -0.98 -44.18 18.10 -127.37 -2.31 -46.48 16 13 C -0.61 -17.39 6.18 71.98 0.44 -16.95 16 14 C 0.07 1.95 5.82 71.98 0.42 2.37 16 15 O -0.37 -9.95 10.60 -148.98 -1.58 -11.53 16 16 C -0.02 -0.38 6.44 30.59 0.20 -0.18 16 17 C -0.18 -3.06 10.48 30.59 0.32 -2.74 16 18 C -0.18 -2.93 10.48 30.59 0.32 -2.61 16 19 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 20 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 21 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 22 H 0.16 3.89 8.14 -2.39 -0.02 3.87 16 23 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.13 2.16 7.93 -2.39 -0.02 2.15 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.08 280.48 -0.23 -71.31 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.11 Total: 12.64 kcal Atomic # 6 Polarization: -71.78 SS G_CDS: 2.79 Total: -68.99 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.28 Total: -51.16 kcal Atomic # 8 Polarization: -98.28 SS G_CDS: -6.19 Total: -104.46 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 96.01 SS G_CDS: -0.26 Total: 95.75 kcal Total: -71.08 -0.23 -71.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899502346.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.689 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds