Wall clock time and date at job start Sun Mar 29 2020 21:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 H 1.09000 * 109.46831 * 54.99657 * 3 2 1 5 5 C 1.52998 * 109.47211 * 175.00015 * 3 2 1 6 6 N 1.46506 * 109.46782 * 295.00032 * 3 2 1 7 7 C 1.39673 * 119.99605 * 154.99981 * 6 3 2 8 8 C 1.38910 * 120.07913 * 359.72651 * 7 6 3 9 9 C 1.38103 * 119.92760 * 179.77008 * 8 7 6 10 10 C 1.38287 * 120.07099 * 0.50099 * 9 8 7 11 11 C 1.50700 * 119.92402 * 179.76895 * 10 9 8 12 12 C 1.50699 * 109.47024 * 269.97861 * 11 10 9 13 13 H 1.07999 * 120.00500 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99906 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46915 * 90.00161 * 16 14 12 18 18 H 1.48494 * 109.46900 * 210.00307 * 16 14 12 19 19 H 1.48498 * 109.47159 * 330.00181 * 16 14 12 20 20 C 1.38282 * 120.15072 * 359.74946 * 10 9 8 21 21 C 1.38100 * 120.07558 * 359.97438 * 20 10 9 22 22 H 1.09000 * 109.47076 * 60.00044 * 1 2 3 23 23 H 1.09001 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47050 * 299.99956 * 1 2 3 25 25 H 1.08995 * 109.47218 * 240.00341 * 2 1 3 26 26 H 1.09000 * 109.47102 * 119.99399 * 2 1 3 27 27 H 1.09002 * 109.46901 * 59.99641 * 5 3 2 28 28 H 1.09001 * 109.47093 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47121 * 299.99744 * 5 3 2 30 30 H 0.96995 * 120.00050 * 334.72425 * 6 3 2 31 31 H 1.08003 * 120.03581 * 359.97438 * 8 7 6 32 32 H 1.07994 * 119.96632 * 180.25170 * 9 8 7 33 33 H 1.08999 * 109.46886 * 29.97995 * 11 10 9 34 34 H 1.08994 * 109.47359 * 149.98140 * 11 10 9 35 35 H 0.97000 * 120.00360 * 180.02562 * 15 14 12 36 36 H 1.08009 * 119.96047 * 179.97438 * 20 10 9 37 37 H 1.08005 * 120.03633 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6523 2.0975 -1.2519 7 6 1.5208 3.4871 -1.3014 8 6 1.7517 4.2493 -0.1632 9 6 1.6254 5.6235 -0.2168 10 6 1.2595 6.2400 -1.3993 11 6 1.1176 7.7394 -1.4528 12 6 -0.2986 8.1225 -1.1083 13 1 -1.0233 7.3570 -0.8737 14 6 -0.6689 9.4506 -1.0917 15 7 0.2138 10.3829 -1.3769 16 14 -2.4245 9.9255 -0.6654 17 1 -2.5393 10.1321 0.8007 18 1 -2.7829 11.1815 -1.3719 19 1 -3.3469 8.8405 -1.0862 20 6 1.0239 5.4840 -2.5329 21 6 1.1539 4.1098 -2.4876 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.9994 0.9054 -0.7161 28 1 3.9281 2.4721 0.1253 29 1 3.8532 0.9572 1.0571 30 1 1.4909 1.5664 -2.0473 31 1 2.0328 3.7679 0.7619 32 1 1.8087 6.2169 0.6666 33 1 1.8017 8.1948 -0.7367 34 1 1.3552 8.0913 -2.4566 35 1 -0.0466 11.3173 -1.3648 36 1 0.7378 5.9687 -3.4547 37 1 0.9693 3.5199 -3.3733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903298782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:39 Heat of formation + Delta-G solvation = 1.277478 kcal Electronic energy + Delta-G solvation = -15781.282030 eV Core-core repulsion = 13329.309609 eV Total energy + Delta-G solvation = -2451.972421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07958 -36.93200 -33.61947 -32.33980 -30.46948 -29.97367 -29.14342 -26.06154 -23.84362 -22.72160 -22.43434 -20.53944 -19.75668 -17.07345 -16.20214 -15.87152 -14.84841 -14.32071 -14.22749 -14.14971 -13.61613 -13.46601 -12.92259 -12.67855 -12.59138 -12.36351 -11.88725 -11.87512 -11.46373 -11.26715 -11.14952 -10.99741 -10.77516 -10.59447 -10.48359 -10.02367 -9.73723 -9.36149 -8.96105 -8.34303 -8.17143 -6.68866 -5.94188 -3.98687 2.18617 2.43793 3.34995 3.40927 3.45645 3.70617 4.47299 4.60993 4.72017 4.91469 4.95673 5.28105 5.38285 5.45071 5.51423 5.59550 5.60894 5.66989 5.77673 5.80651 5.94656 6.08611 6.12624 6.17350 6.26582 6.39201 6.54042 6.78054 6.93218 7.36318 7.36706 7.51692 7.66748 7.93147 8.01238 8.03283 8.14452 8.45147 9.07274 9.64604 11.14033 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.004940 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.906402 B = 5666.966222 C = 5929.831101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.151 3.849 4 H 0.076 0.924 5 C -0.169 4.169 6 N -0.751 5.751 7 C 0.185 3.815 8 C -0.196 4.196 9 C -0.081 4.081 10 C -0.086 4.086 11 C 0.053 3.947 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.080 4.080 21 C -0.195 4.195 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.391 0.609 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -18.898 1.879 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.045 3.955 4 H 0.094 0.906 5 C -0.228 4.228 6 N -0.383 5.383 7 C 0.085 3.915 8 C -0.219 4.219 9 C -0.100 4.100 10 C -0.088 4.088 11 C 0.016 3.984 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.099 4.099 21 C -0.218 4.218 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.225 0.775 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.874 -18.745 2.052 19.251 hybrid contribution -1.029 0.151 -0.060 1.042 sum 2.845 -18.594 1.992 18.915 Atomic orbital electron populations 1.21751 0.95357 1.01177 1.02591 1.21796 0.96562 0.96003 1.02357 1.20817 0.93892 0.92633 0.88205 0.90557 1.22309 0.96619 1.02589 1.01289 1.44502 1.78938 1.03331 1.11549 1.17603 0.96815 0.83007 0.94072 1.20540 1.10522 0.94090 0.96718 1.20845 0.98135 0.93154 0.97822 1.20445 0.97240 0.98811 0.92282 1.18241 0.97135 0.85131 0.97874 1.21143 0.95286 0.91750 1.46388 0.92585 1.25018 0.97328 0.96605 0.95490 1.69962 1.33963 1.00312 1.49367 0.86578 0.85033 0.77896 0.78443 1.20672 1.21242 1.19866 1.20819 0.98117 0.92364 0.98550 1.20456 1.10073 0.95066 0.96179 0.92252 0.93039 0.92647 0.91831 0.91000 0.92750 0.91967 0.92395 0.77525 0.87313 0.86746 0.95736 0.95726 0.92987 0.86687 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.80 37.16 0.36 -0.99 16 2 C -0.13 -1.08 5.47 -26.73 -0.15 -1.23 16 3 C 0.15 1.60 2.27 -67.92 -0.15 1.44 16 4 H 0.08 0.89 6.47 -51.93 -0.34 0.56 16 5 C -0.17 -1.69 9.44 37.16 0.35 -1.34 16 6 N -0.75 -9.41 4.70 -52.16 -0.25 -9.66 16 7 C 0.18 3.02 6.64 -83.79 -0.56 2.46 16 8 C -0.20 -3.43 8.86 -39.38 -0.35 -3.78 16 9 C -0.08 -1.65 9.69 -39.61 -0.38 -2.03 16 10 C -0.09 -1.95 5.07 -104.59 -0.53 -2.48 16 11 C 0.05 1.41 5.10 -29.04 -0.15 1.26 16 12 C -0.51 -14.61 9.09 -34.44 -0.31 -14.92 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 20 C -0.08 -1.63 9.69 -39.62 -0.38 -2.01 16 21 C -0.20 -3.40 9.90 -39.38 -0.39 -3.79 16 22 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.39 4.31 8.62 -40.82 -0.35 3.96 16 31 H 0.11 1.66 6.15 -52.48 -0.32 1.34 16 32 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.38 307.31 -8.64 -39.02 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.00 Total: 1.25 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -2.74 Total: -25.88 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.49 Total: -35.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.38 -8.64 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903298782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.293 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds