Wall clock time and date at job start Sun Mar 29 2020 22:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21234 * 119.99678 * 2 1 4 4 C 1.47342 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.39855 * 120.01920 * 180.02562 * 4 2 1 6 6 C 1.37711 * 119.97857 * 180.27608 * 5 4 2 7 7 C 1.39688 * 120.02186 * 359.51414 * 6 5 4 8 8 C 1.47838 * 119.98585 * 180.23365 * 7 6 5 9 9 O 1.21484 * 120.00326 * 180.22541 * 8 7 6 10 10 O 1.34701 * 119.99680 * 0.22718 * 8 7 6 11 11 C 1.34776 * 116.99995 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00191 * 359.97438 * 11 10 8 13 13 C 1.38912 * 120.00258 * 180.02562 * 11 10 8 14 14 N 1.31347 * 119.99428 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00328 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47289 * 59.99624 * 15 13 11 17 17 H 1.48500 * 109.47329 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47083 * 299.99690 * 15 13 11 19 19 C 1.39691 * 120.03799 * 0.45856 * 7 6 5 20 20 C 1.37716 * 120.01513 * 359.80110 * 19 7 6 21 21 H 1.09000 * 109.47427 * 270.00343 * 1 2 3 22 22 H 1.08996 * 109.47268 * 30.00379 * 1 2 3 23 23 H 1.08997 * 109.47092 * 150.00464 * 1 2 3 24 24 H 1.08002 * 120.00729 * 359.97438 * 5 4 2 25 25 H 1.07998 * 119.99196 * 179.72145 * 6 5 4 26 26 H 0.97007 * 119.99965 * 180.02562 * 14 13 11 27 27 H 1.07993 * 119.98922 * 179.76800 * 19 7 6 28 28 H 1.08000 * 120.00830 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0500 0.0000 4 6 2.2437 -1.2760 0.0006 5 6 3.6423 -1.2764 0.0011 6 6 4.3300 -2.4695 -0.0041 7 6 3.6312 -3.6790 0.0003 8 6 4.3704 -4.9594 -0.0001 9 8 3.7630 -6.0115 -0.0003 10 8 5.7174 -4.9593 0.0000 11 6 6.3293 -6.1602 -0.0009 12 1 5.7411 -7.0660 -0.0012 13 6 7.7165 -6.2329 -0.0004 14 7 8.4318 -5.1313 0.0004 15 14 8.5646 -7.8972 -0.0024 16 1 8.1661 -8.6545 -1.2161 17 1 10.0368 -7.7027 -0.0021 18 1 8.1651 -8.6578 1.2090 19 6 2.2343 -3.6796 0.0004 20 6 1.5450 -2.4874 0.0002 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5137 24 1 4.1827 -0.3413 0.0007 25 1 5.4100 -2.4701 -0.0082 26 1 9.4005 -5.1820 0.0003 27 1 1.6949 -4.6151 0.0000 28 1 0.4650 -2.4879 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915563466.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:10 Heat of formation + Delta-G solvation = -94.017681 kcal Electronic energy + Delta-G solvation = -15237.421809 eV Core-core repulsion = 12411.932228 eV Total energy + Delta-G solvation = -2825.489581 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.00225 -39.09822 -37.67083 -35.23718 -32.41980 -31.99600 -30.80861 -29.48721 -25.87647 -24.21612 -22.29899 -20.85502 -19.63783 -17.86457 -17.51046 -16.50875 -15.53425 -15.08404 -15.04593 -14.60566 -14.49880 -14.37232 -13.85229 -13.40592 -13.01427 -12.56616 -12.30613 -12.14036 -12.06633 -11.67474 -11.28646 -10.89412 -10.54651 -10.54476 -9.97099 -9.81036 -9.19630 -8.85349 -8.79638 -8.69973 -6.58400 -4.18791 0.50759 1.55707 2.24514 3.09071 3.11418 3.15615 3.46494 3.80780 4.00098 4.22307 4.40677 4.82965 4.94975 5.03660 5.07771 5.22962 5.34142 5.52774 5.57374 5.74446 5.87219 6.12756 6.22879 6.45582 6.60087 6.86789 7.00585 7.25235 7.46320 7.79362 8.57785 8.89573 9.69488 10.58594 Molecular weight = 234.07amu Principal moments of inertia in cm(-1) A = 0.057023 B = 0.005171 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.910530 B = 5413.354954 C = 5889.120833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.463 6.463 4 C -0.172 4.172 5 C -0.071 4.071 6 C -0.089 4.089 7 C -0.050 4.050 8 C 0.420 3.580 9 O -0.552 6.552 10 O -0.199 6.199 11 C -0.373 4.373 12 H 0.099 0.901 13 C 0.042 3.958 14 N -0.852 5.852 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.268 1.268 19 C -0.089 4.089 20 C -0.086 4.086 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.135 0.865 25 H 0.148 0.852 26 H 0.274 0.726 27 H 0.140 0.860 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 6.601 0.046 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.276 3.724 3 O -0.339 6.339 4 C -0.173 4.173 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.051 4.051 8 C 0.269 3.731 9 O -0.451 6.451 10 O -0.105 6.105 11 C -0.449 4.449 12 H 0.117 0.883 13 C -0.164 4.164 14 N -0.488 5.488 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.193 1.193 19 C -0.107 4.107 20 C -0.104 4.104 21 H 0.115 0.885 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.931 6.955 0.043 12.956 hybrid contribution 0.432 -0.907 0.010 1.005 sum -10.499 6.048 0.053 12.116 Atomic orbital electron populations 1.22235 0.93934 1.04841 1.04723 1.22559 0.91578 0.87645 0.70662 1.90519 1.72216 1.34385 1.36828 1.20566 0.94718 0.94588 1.07425 1.21368 0.92931 0.98660 0.95935 1.21638 1.01765 0.90783 0.96528 1.19725 0.93424 0.92297 0.99675 1.20747 0.83055 0.88292 0.81016 1.90624 1.69457 1.33210 1.51832 1.83853 1.17370 1.35307 1.74012 1.21341 0.89375 0.82969 1.51189 0.88291 1.25451 0.95214 0.99795 0.95937 1.69934 1.06954 1.27624 1.44244 0.85665 0.77796 0.79768 0.79558 1.19263 1.20189 1.19258 1.21202 0.92743 0.98763 0.97999 1.21289 0.99822 0.91021 0.98254 0.88481 0.89581 0.89383 0.84699 0.83447 0.91585 0.84245 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 9.75 36.00 0.35 -1.22 15 2 C 0.40 4.92 7.23 -30.61 -0.22 4.70 15 3 O -0.46 -7.23 17.08 5.60 0.10 -7.13 15 4 C -0.17 -2.37 5.87 -104.99 -0.62 -2.99 15 5 C -0.07 -1.11 9.58 -39.17 -0.38 -1.48 15 6 C -0.09 -1.61 9.60 -39.23 -0.38 -1.99 15 7 C -0.05 -0.99 5.88 -104.89 -0.62 -1.60 15 8 C 0.42 10.54 7.84 34.66 0.27 10.81 15 9 O -0.55 -14.82 15.58 -19.25 -0.30 -15.12 15 10 O -0.20 -5.61 8.97 -21.33 -0.19 -5.80 15 11 C -0.37 -10.78 9.65 30.98 0.30 -10.48 15 12 H 0.10 2.86 6.86 -52.49 -0.36 2.50 15 13 C 0.04 1.14 5.50 -17.51 -0.10 1.05 15 14 N -0.85 -24.09 13.67 55.49 0.76 -23.34 15 15 Si 0.95 20.61 29.55 -169.99 -5.02 15.59 15 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 19 C -0.09 -1.43 9.58 -39.23 -0.38 -1.81 15 20 C -0.09 -1.09 9.35 -39.17 -0.37 -1.46 15 21 H 0.10 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.09 0.53 6.46 -51.93 -0.34 0.20 15 24 H 0.14 1.97 7.64 -52.49 -0.40 1.57 15 25 H 0.15 2.83 7.60 -52.49 -0.40 2.43 15 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 27 H 0.14 2.18 7.63 -52.49 -0.40 1.78 15 28 H 0.13 1.16 6.34 -52.49 -0.33 0.83 15 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -32.77 263.10 -5.03 -37.80 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -2.21 Total: 0.51 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.12 Total: -6.47 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.76 Total: -23.34 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.40 Total: -28.06 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.77 -5.03 -37.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915563466.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.220 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds