Wall clock time and date at job start Sun Mar 29 2020 21:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47000 * 96.89773 * 3 2 1 5 5 N 1.46896 * 112.85135 * 311.05903 * 4 3 2 6 6 C 1.46907 * 111.00125 * 294.68398 * 5 4 3 7 7 C 1.52995 * 109.47191 * 185.03477 * 6 5 4 8 8 C 1.50702 * 115.55061 * 29.89525 * 7 6 5 9 9 H 1.08004 * 120.00264 * 273.61142 * 8 7 6 10 10 C 1.37881 * 119.99999 * 93.60834 * 8 7 6 11 11 N 1.31509 * 119.99935 * 4.59191 * 10 8 7 12 12 Si 1.86797 * 120.00090 * 184.58698 * 10 8 7 13 13 H 1.48495 * 109.47296 * 90.00206 * 12 10 8 14 14 H 1.48500 * 109.47204 * 210.00565 * 12 10 8 15 15 H 1.48505 * 109.47241 * 330.00359 * 12 10 8 16 16 C 1.52994 * 117.50102 * 244.18547 * 7 6 5 17 17 C 1.52992 * 60.00227 * 252.51127 * 16 7 6 18 18 C 1.53780 * 113.61214 * 179.86416 * 4 3 2 19 19 C 1.53778 * 87.08234 * 220.01754 * 18 4 3 20 20 C 1.53780 * 87.17293 * 25.39221 * 19 18 4 21 21 H 4.44652 * 5.63292 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.47323 * 336.89423 * 3 2 1 23 23 H 1.09005 * 109.46725 * 216.89557 * 3 2 1 24 24 H 1.00901 * 111.00006 * 58.63661 * 5 4 3 25 25 H 1.09000 * 109.46817 * 305.03430 * 6 5 4 26 26 H 1.08997 * 109.46908 * 65.03675 * 6 5 4 27 27 H 0.97004 * 120.00311 * 179.97438 * 11 10 8 28 28 H 1.09005 * 117.49938 * 0.02562 * 16 7 6 29 29 H 1.09005 * 117.50281 * 145.01764 * 16 7 6 30 30 H 1.09004 * 117.49836 * 252.51147 * 17 16 7 31 31 H 1.09001 * 117.49837 * 107.48951 * 17 16 7 32 32 H 1.09003 * 113.61345 * 105.46915 * 18 4 3 33 33 H 1.09001 * 113.69259 * 334.57562 * 18 4 3 34 34 H 1.09005 * 113.61691 * 139.97789 * 19 18 4 35 35 H 1.09000 * 113.61694 * 270.80033 * 19 18 4 36 36 H 1.09003 * 113.61925 * 89.15790 * 20 19 18 37 37 H 1.09004 * 113.61794 * 220.06223 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.1741 -1.4321 5 7 2.5082 -0.7393 -2.3828 6 6 2.8488 -2.1371 -2.0854 7 6 2.2610 -3.0463 -3.1664 8 6 2.1311 -2.4289 -4.5350 9 1 1.2492 -1.8593 -4.7890 10 6 3.1380 -2.5910 -5.4629 11 7 4.1696 -3.3584 -5.1865 12 14 3.0367 -1.7208 -7.1127 13 1 3.6847 -0.3885 -7.0102 14 1 3.7328 -2.5318 -8.1437 15 1 1.6121 -1.5501 -7.4958 16 6 1.1882 -4.0498 -2.7389 17 6 2.5943 -4.5377 -3.0931 18 6 4.6897 0.1915 -1.5419 19 6 4.5240 1.3108 -2.5833 20 6 3.1833 1.6389 -1.9052 21 1 -1.0500 -0.0002 0.0001 22 1 3.0099 -0.9444 0.4033 23 1 3.0090 0.8227 0.6170 24 1 1.5083 -0.6044 -2.3898 25 1 3.9327 -2.2505 -2.0651 26 1 2.4363 -2.4129 -1.1149 27 1 4.8778 -3.4727 -5.8394 28 1 0.9008 -4.0620 -1.6875 29 1 0.3879 -4.2635 -3.4475 30 1 2.7193 -5.0724 -4.0347 31 1 3.2324 -4.8712 -2.2746 32 1 5.1085 -0.7277 -1.9518 33 1 5.1906 0.5148 -0.6294 34 1 5.2651 2.1050 -2.4924 35 1 4.4187 0.9450 -3.6046 36 1 3.2702 2.3590 -1.0915 37 1 2.3877 1.8867 -2.6078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933294375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:14 Heat of formation + Delta-G solvation = 83.995386 kcal Electronic energy + Delta-G solvation = -16835.153137 eV Core-core repulsion = 14386.767633 eV Total energy + Delta-G solvation = -2448.385504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62710 -38.30345 -34.87108 -33.84226 -33.38023 -29.77370 -27.54280 -26.89209 -25.77278 -23.53970 -22.81764 -20.90464 -19.53517 -18.84823 -17.88654 -16.86467 -16.48306 -16.04262 -15.89820 -15.16916 -14.91329 -14.75271 -14.45041 -14.05664 -13.55517 -13.16022 -13.05317 -12.79114 -12.64057 -12.35282 -12.24810 -11.95506 -11.91074 -11.55009 -11.18882 -11.10303 -10.96258 -10.82073 -10.76815 -10.24740 -9.80444 -8.88754 -7.94480 -6.00066 1.43530 1.46339 1.52879 1.93654 1.98462 2.52047 3.32131 3.37728 3.49185 3.59652 3.82233 3.97444 4.10488 4.16442 4.44656 4.54039 4.62075 4.70929 4.74302 4.81734 4.87046 4.89099 4.94177 5.02381 5.13597 5.17047 5.19976 5.30970 5.34816 5.51628 5.61191 5.70987 5.78418 5.90452 6.44745 6.68108 6.75036 6.82898 7.01309 7.63443 9.12916 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.009989 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.702029 B = 2802.387946 C = 3443.909069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C -0.031 4.031 4 C 0.087 3.913 5 N -0.643 5.643 6 C 0.127 3.873 7 C 0.015 3.985 8 C -0.459 4.459 9 H 0.044 0.956 10 C 0.028 3.972 11 N -0.912 5.912 12 Si 0.940 3.060 13 H -0.282 1.282 14 H -0.291 1.291 15 H -0.274 1.274 16 C -0.199 4.199 17 C -0.150 4.150 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.115 4.115 21 H 0.240 0.760 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.334 0.666 25 H 0.042 0.958 26 H 0.008 0.992 27 H 0.252 0.748 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 8.403 10.199 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.208 4.208 3 C -0.070 4.070 4 C -0.005 4.005 5 N -0.273 5.273 6 C -0.002 4.002 7 C 0.014 3.986 8 C -0.498 4.498 9 H 0.062 0.938 10 C -0.171 4.171 11 N -0.552 5.552 12 Si 0.768 3.232 13 H -0.208 1.208 14 H -0.218 1.218 15 H -0.199 1.199 16 C -0.236 4.236 17 C -0.188 4.188 18 C -0.164 4.164 19 C -0.164 4.164 20 C -0.153 4.153 21 H 0.257 0.743 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.153 0.847 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.209 8.403 9.614 12.826 hybrid contribution -0.575 -0.251 -0.439 0.766 sum -1.784 8.152 9.174 12.402 Atomic orbital electron populations 1.25579 0.96801 1.00727 1.00002 1.23447 0.95227 1.00905 1.01174 1.19449 0.84960 1.03600 0.98952 1.22242 0.95181 0.94562 0.88498 1.60189 1.13993 1.03646 1.49447 1.21127 0.97984 0.87832 0.93274 1.19134 0.97059 0.87843 0.94556 1.20281 1.02871 1.30749 0.95862 0.93820 1.25428 0.95524 0.95568 1.00568 1.70126 1.10430 1.38854 1.35766 0.85853 0.77774 0.78711 0.80898 1.20786 1.21773 1.19854 1.23107 0.92366 1.08887 0.99274 1.22287 0.96401 1.00523 0.99584 1.23016 0.94310 0.99004 1.00093 1.22544 0.97817 0.98186 0.97855 1.22977 0.97483 0.94515 1.00311 0.74343 0.90384 0.87116 0.84736 0.93933 0.97382 0.93898 0.89955 0.91066 0.91962 0.91529 0.93680 0.87325 0.90103 0.92997 0.87563 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.55 19.25 74.32 1.43 -4.12 16 2 C -0.21 -5.93 12.05 31.13 0.37 -5.56 16 3 C -0.03 -0.82 4.72 28.79 0.14 -0.69 16 4 C 0.09 2.71 0.63 4.11 0.00 2.71 16 5 N -0.64 -25.66 5.18 -467.28 -2.42 -28.08 16 6 C 0.13 5.54 5.42 86.30 0.47 6.01 16 7 C 0.01 0.73 2.05 -52.93 -0.11 0.62 16 8 C -0.46 -25.16 7.99 25.60 0.20 -24.95 16 9 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 10 C 0.03 1.54 5.41 84.66 0.46 2.00 16 11 N -0.91 -53.12 11.90 21.45 0.26 -52.86 16 12 Si 0.94 45.29 29.54 68.60 2.03 47.32 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 16 C -0.20 -8.81 9.88 30.59 0.30 -8.51 16 17 C -0.15 -7.33 8.88 30.59 0.27 -7.06 16 18 C -0.13 -3.81 7.15 31.12 0.22 -3.59 16 19 C -0.13 -3.81 7.99 31.12 0.25 -3.56 16 20 C -0.12 -3.16 7.43 31.18 0.23 -2.93 16 21 H 0.24 4.41 7.80 -4.42 -0.03 4.37 16 22 H 0.08 2.13 7.52 -2.38 -0.02 2.12 16 23 H 0.11 2.28 7.95 -2.38 -0.02 2.26 16 24 H 0.33 13.51 7.72 -89.69 -0.69 12.82 16 25 H 0.04 2.01 6.50 -2.39 -0.02 2.00 16 26 H 0.01 0.34 6.99 -2.39 -0.02 0.32 16 27 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.08 3.22 8.03 -2.38 -0.02 3.20 16 29 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 30 H 0.06 3.37 7.63 -2.39 -0.02 3.35 16 31 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.04 1.67 6.65 -2.39 -0.02 1.65 16 33 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 2.24 7.97 -2.39 -0.02 2.22 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.46 306.49 4.45 -57.02 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.34 Total: 26.23 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 4.24 Total: -49.63 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.17 Total: -80.94 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -61.46 4.45 -57.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933294375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.013 kcal (2) G-P(sol) polarization free energy of solvation -61.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds