Wall clock time and date at job start Sun Mar 29 2020 22:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47149 * 239.99989 * 3 2 1 5 5 H 1.48493 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46769 * 119.99950 * 3 2 1 7 7 C 1.38758 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36817 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.39347 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.39149 * 120.18330 * 359.97438 * 10 9 7 12 12 C 1.38078 * 120.09546 * 180.02562 * 11 10 9 13 13 C 1.38426 * 120.35428 * 359.93986 * 12 11 10 14 14 C 1.38492 * 120.05682 * 0.03716 * 13 12 11 15 15 C 1.39218 * 119.92307 * 0.02862 * 14 13 12 16 16 N 1.40248 * 119.32714 * 179.91066 * 15 14 13 17 17 C 1.35100 * 118.97329 * 15.45758 * 16 15 14 18 18 O 1.21297 * 120.14693 * 181.69835 * 17 16 15 19 19 C 1.50754 * 119.69979 * 1.67794 * 17 16 15 20 20 O 1.36005 * 120.63222 * 180.02562 * 14 13 12 21 21 H 0.97004 * 120.00017 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00102 * 0.02562 * 9 7 2 23 23 H 1.08004 * 119.95602 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.82541 * 179.97438 * 12 11 10 25 25 H 1.08005 * 119.97401 * 180.02562 * 13 12 11 26 26 H 0.97006 * 120.51102 * 195.43228 * 16 15 14 27 27 H 1.09001 * 109.44245 * 208.65514 * 19 17 16 28 28 H 1.08994 * 109.42097 * 88.73174 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0099 -1.2017 -0.0005 8 1 3.0899 -1.2017 -0.0001 9 7 1.3258 -2.3865 -0.0005 10 6 2.0226 -3.5933 -0.0016 11 6 3.4141 -3.5977 -0.0032 12 6 4.1027 -4.7945 -0.0048 13 6 3.4162 -5.9965 -0.0036 14 6 2.0313 -6.0044 -0.0015 15 6 1.3300 -4.8018 -0.0013 16 7 -0.0723 -4.8243 -0.0010 17 6 -0.7083 -5.9739 0.3139 18 8 -1.9199 -6.0258 0.2908 19 6 0.0948 -7.1919 0.6938 20 8 1.3450 -7.1786 0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 0.3559 -2.3866 -0.0005 23 1 3.9564 -2.6636 -0.0032 24 1 5.1827 -4.7928 -0.0065 25 1 3.9610 -6.9291 -0.0044 26 1 -0.5777 -4.0267 -0.2233 27 1 -0.4601 -8.0907 0.4247 28 1 0.2763 -7.1856 1.7685 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:15 Heat of formation + Delta-G solvation = -58.022298 kcal Electronic energy + Delta-G solvation = -16012.971500 eV Core-core repulsion = 13221.335547 eV Total energy + Delta-G solvation = -2791.635953 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22474 -39.82766 -38.91139 -36.45054 -35.90512 -33.62028 -30.85131 -29.59206 -28.46144 -26.64342 -24.43008 -22.78488 -20.86501 -20.01335 -19.67880 -18.55485 -17.73654 -17.32916 -16.72083 -16.15253 -16.01925 -15.87930 -15.40958 -15.21252 -14.67032 -14.33860 -13.66348 -13.50152 -13.20602 -12.98473 -12.52116 -12.28900 -12.10336 -11.98220 -11.75413 -11.52830 -11.05876 -10.54417 -8.85979 -8.50701 -8.44866 -5.76009 0.35352 0.77759 1.38175 1.42649 1.50223 1.53030 1.85490 2.26968 2.47188 2.86950 3.15965 3.27897 3.32007 4.10668 4.17567 4.24429 4.29519 4.68552 4.76835 5.02408 5.16992 5.32036 5.37695 5.64103 5.74800 5.85270 5.94313 6.07917 6.54454 6.75556 6.79453 7.40200 7.51339 8.67398 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.007947 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.858191 B = 3522.551818 C = 4403.804864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.033 4.033 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.315 4.315 8 H 0.115 0.885 9 N -0.583 5.583 10 C 0.198 3.802 11 C -0.230 4.230 12 C -0.036 4.036 13 C -0.216 4.216 14 C 0.128 3.872 15 C -0.064 4.064 16 N -0.648 5.648 17 C 0.477 3.523 18 O -0.573 6.573 19 C 0.061 3.939 20 O -0.309 6.309 21 H 0.274 0.726 22 H 0.386 0.614 23 H 0.124 0.876 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.400 0.600 27 H 0.169 0.831 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -9.210 1.410 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.231 4.231 3 Si 0.824 3.176 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.132 0.868 9 N -0.188 5.188 10 C 0.079 3.921 11 C -0.255 4.255 12 C -0.056 4.056 13 C -0.239 4.239 14 C 0.081 3.919 15 C -0.163 4.163 16 N -0.293 5.293 17 C 0.265 3.735 18 O -0.454 6.454 19 C -0.017 4.017 20 O -0.223 6.223 21 H 0.083 0.917 22 H 0.219 0.781 23 H 0.142 0.858 24 H 0.175 0.825 25 H 0.168 0.832 26 H 0.237 0.763 27 H 0.186 0.814 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.406 -9.135 1.360 11.240 hybrid contribution -1.112 1.756 -0.084 2.080 sum 5.294 -7.379 1.277 9.171 Atomic orbital electron populations 1.69792 1.07535 1.29252 1.50891 1.26200 0.96474 1.03152 0.97273 0.84842 0.77427 0.75889 0.79459 1.18835 1.21276 1.18826 1.20027 0.93684 0.82981 1.47756 0.86781 1.40853 1.07384 1.02460 1.68124 1.17717 0.92774 0.83992 0.97638 1.20611 0.90768 0.99647 1.14434 1.20934 1.00510 0.89870 0.94256 1.20245 0.89266 0.99704 1.14637 1.18467 0.91964 0.81477 0.99972 1.17392 0.81560 0.93717 1.23676 1.43527 1.05818 1.13665 1.66311 1.22176 0.88541 0.86108 0.76631 1.90726 1.15147 1.84981 1.54505 1.23282 0.82184 0.96365 0.99857 1.86146 1.32807 1.30854 1.72488 0.91701 0.78059 0.85843 0.82475 0.83214 0.76291 0.81377 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -50.73 13.05 21.64 0.28 -50.45 15 2 C -0.03 -1.64 5.50 84.85 0.47 -1.18 15 3 Si 1.00 39.76 29.55 68.60 2.03 41.78 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 5 H -0.29 -11.51 7.11 99.48 0.71 -10.80 15 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.32 -15.69 9.56 84.04 0.80 -14.89 15 8 H 0.11 5.26 5.69 -2.91 -0.02 5.25 15 9 N -0.58 -28.17 5.42 -184.09 -1.00 -29.17 15 10 C 0.20 8.41 6.63 38.42 0.25 8.67 15 11 C -0.23 -8.53 9.30 22.45 0.21 -8.32 15 12 C -0.04 -1.06 10.03 22.28 0.22 -0.84 15 13 C -0.22 -6.34 10.00 22.38 0.22 -6.11 15 14 C 0.13 4.35 6.44 22.57 0.15 4.50 15 15 C -0.06 -2.50 6.57 38.28 0.25 -2.25 15 16 N -0.65 -25.46 5.39 -302.20 -1.63 -27.09 15 17 C 0.48 17.19 7.94 87.62 0.70 17.89 15 18 O -0.57 -23.76 17.95 -3.08 -0.06 -23.82 15 19 C 0.06 1.59 7.17 71.25 0.51 2.10 15 20 O -0.31 -9.28 10.45 -93.61 -0.98 -10.26 15 21 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 22 H 0.39 19.55 6.24 -92.71 -0.58 18.97 15 23 H 0.12 4.56 5.97 -2.91 -0.02 4.54 15 24 H 0.16 3.32 8.06 -2.91 -0.02 3.30 15 25 H 0.15 3.47 8.06 -2.91 -0.02 3.45 15 26 H 0.40 16.65 7.28 -92.70 -0.68 15.97 15 27 H 0.17 3.27 8.14 -2.39 -0.02 3.25 15 28 H 0.12 2.52 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -60.57 248.16 2.41 -58.16 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.02 Total: 41.26 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 3.78 Total: -0.43 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -2.35 Total: -106.70 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.03 Total: -34.07 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -60.57 2.41 -58.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.139 kcal (2) G-P(sol) polarization free energy of solvation -60.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds